Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18170 186 / 4e-59 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G73655 174 / 1e-54 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G19830 55 / 4e-09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 55 / 5e-09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G26555 54 / 9e-09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13410 49 / 1e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G20810 44 / 2e-05 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G60370 43 / 5e-05 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G43560 42 / 0.0002 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038954 [exp] 359 / 1e-127 AT1G18170 193 / 1e-61 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10031342 [exp] 163 / 1e-50 AT1G18170 261 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10038345 [exp] 57 / 7e-10 AT4G19830 262 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10036206 [exp] 56 / 8e-10 AT4G19830 260 / 4e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10035560 [exp] 50 / 3e-07 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10006949 [exp] 49 / 8e-07 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10042897 [exp] 49 / 8e-07 AT3G60370 312 / 8e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10028194 [exp] 47 / 6e-06 AT3G60370 305 / 2e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009062 [exp] 45 / 2e-05 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048300 [exp] 177 / 2e-55 AT1G18170 249 / 3e-83 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G119800 [exp] 58 / 4e-10 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G096600 [exp] 50 / 3e-07 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G045600 [exp] 50 / 4e-07 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G075500 [exp] 48 / 9e-07 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.001G068300 [exp] 48 / 2e-06 AT5G13410 332 / 4e-116 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10027246 pacid=23145433 polypeptide=Lus10027246 locus=Lus10027246.g ID=Lus10027246.BGIv1.0 annot-version=v1.0 ATGACGACGATGAAGATAACTCCATCCATGATAACAGGAGGAAGACAGCAGCAGCCATTACTAAGCCAACCCTTCACTGCAACAAGAACAAGTTCAAGAA GCTTCAGCAGCATCAGTTGCTCACTTCAAACACAGAAGCTAATGATGACAGATTCGTCTGATGGCTTGACACGGAGATTCGGACTAGGAGCAGCAGGAAT CTCTTGGGCAGCTTTTCTAGTTTCTCAGAAGAAGACCAAAGACACCAGAGACATGGAGAAGGGAGGAGTAGTGGTTTTGCCAAATGGAATACGGTACTAT GATATGGAGATAGGAACAGGGGAATGTCCAAGGGCAGGAGACTTGGTGGTGATGAATCTAAAGGGGAATGTAGTTGGAGGGAAAGACGGGGTAACGATTG TCGACACATTCGAAGGAACGAAGAAGAAGAAGCCGATGGCTATGGTGGTAATGGGTTCAAGGCCATATAGTAAAGGGATGTGTGAAGGGATAGAGCATGT GGTGAGATCAATGAAGGCTGGTGGTGTAAGAAGGGTTATTGTACCTCCTAGCTTCGGATTCGGTGTCCATGGTGCCGATTTCGGGTCTTTGAACATCCCA CCTTCTTCAACTCTTGAGTACATTGTTGAGGTTCACAGTGTCTCCACCCCAGCTGCATAA
AA sequence Show only first row Show all	>Lus10027246 pacid=23145433 polypeptide=Lus10027246 locus=Lus10027246.g ID=Lus10027246.BGIv1.0 annot-version=v1.0 MTTMKITPSMITGGRQQQPLLSQPFTATRTSSRSFSSISCSLQTQKLMMTDSSDGLTRRFGLGAAGISWAAFLVSQKKTKDTRDMEKGGVVVLPNGIRYY DMEIGTGECPRAGDLVVMNLKGNVVGGKDGVTIVDTFEGTKKKKPMAMVVMGSRPYSKGMCEGIEHVVRSMKAGGVRRVIVPPSFGFGVHGADFGSLNIP PSSTLEYIVEVHSVSTPAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	0	1
AT1G07700			Thioredoxin superfamily protei...		Lus10032343 [exp]	1.0	0.9648
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	3.2	0.9617
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	3.9	0.9526
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10026205 [exp]	6.7	0.9584
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10002673 [exp]	6.9	0.9541
AT1G32470			Single hybrid motif superfamil...		Lus10035374 [exp]	7.7	0.9444
AT2G42190			unknown protein		Lus10031232 [exp]	8.9	0.8987
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10014143 [exp]	9.3	0.9277
AT1G64355			unknown protein		Lus10001903 [exp]	10.9	0.9107
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	11.2	0.9494

Compare expression of checked genes

Lus10027246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.