Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73660 505 / 7e-163 protein tyrosine kinase family protein (.1) AT1G18160 503 / 2e-162 Protein kinase superfamily protein (.1) AT1G08720 429 / 6e-135 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G11850 424 / 1e-133 Protein kinase superfamily protein (.1) AT5G03730 354 / 4e-108 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT5G49470 339 / 2e-106 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 341 / 9e-104 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 333 / 5e-101 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 331 / 2e-100 PAS domain-containing protein tyrosine kinase family protein (.1) AT4G24480 322 / 4e-95 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038955 [exp] 1634 / 0 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 549 / 0 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10009062 [exp] 542 / 2e-177 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10004124 [exp] 430 / 4e-136 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 429 / 7e-136 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10023865 [exp] 355 / 5e-108 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 353 / 3e-107 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10016912 [exp] 337 / 1e-102 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 335 / 5e-101 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040100 [exp] 1046 / 0 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 1008 / 0 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G047600 [exp] 432 / 5e-136 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 431 / 3e-135 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 425 / 2e-133 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 422 / 4e-132 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.008G105100 [exp] 348 / 2e-106 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.016G095750 [exp] 348 / 2e-105 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.002G111200 [exp] 347 / 2e-104 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.010G146000 [exp] 342 / 7e-104 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10027247 pacid=23145508 polypeptide=Lus10027247 locus=Lus10027247.g ID=Lus10027247.BGIv1.0 annot-version=v1.0 ATGAAGAGCCTGTTGAAGAAGCTTCATATTACTAACCAGCAGGCGATTTCATCATCTTCAGAAGGGTCAAGTAATTCACCAAGAGCAAGTAAGTTTGGTG GTGGTGATGTTTCGGTTTCGTCATCATCCCATGAGCACAACAAACCCTTTTCAGGTCTTTCAAATTGGCTGAGTACAGTTAAGATCAACAGGAAGAGTAC TAGCCCTCCAAATTCGTCTCAAGGGGCGAAGATGAAGCCTAATCCAAATGATTCGGCCTCCAGTACTAGCTGTGGTGGCACCCCTAGAGGTGGTGCTGAG ATTGATGAGGAGTATCAGGTGCAAATGGCCTTGGATCTCAGTACAATTGAGGATCCTGAGGCTGCTCAAATTGAGGCTGTCAAGCAGATAAACTCGGTGG GCTCTGATGCTGATCTTGGGAAGAACACTCCTGTTGAGGTTCTTGCTTACCGTTACTGGAATTACAATGCTCTAAGCTACGACGACAGGATCGTGGACGG TTTCTACGACTTGTACAGAATATCCACCGATTCCCAATCAGACAGGATGCCTTCCCTCATCGAGTTGCAAGGAGCTCTCGCCTCGGAAAGCATCACTTGG GAGGCAGTGCTGGTTGATAGGACTACCGACGCGAATCTGCTGAAACTCGAACGTAAGTCGCAAGAAATTGCAAGTGAGACGAGGCCGGAGGAATCTCTGG TTCTTGTGGACGGCAATCTGGTCAAGAAACTAGCTGATCTAGTTTCTGGCTACATGGGGGGACCTGTTGGTGACCCCGAGAACATGTCGGTAGCGTGGAG ACGCCTTAGCTACAGTTTGAGGGCAACCCTTGGTAGCATGGTTTTGCCATTGGGGTCTCTAACTATTGGTCTGGCTCGCCATCGCACACTGATGTTCAAG GTTTTAGCTGATAGTGTGGGCATACCGAGCCGGTTGGTGAAAGGGAATCAGTTCACGGGGTCAGACGATGTGGTCATCAACTTTGTGAAGCTTGATGATG GAAGGGAGTACATTATCGATCTAATGGCGGATCCCGGGACTCTAATCCCTTCTGATGCAGCTGGATTACATCCGGAGCACGATGATCTTTCTTTCTCGGC CAGTCCTTTGTCTAGAGACATTGAATCCTCTCATCTAGCCTCTTCTAGTAGTGGGGTGGTAAGTTCATTCGGAGAGACTTCGACCTCCGAAGTCGGAAAC ACTATCGCTTCGAGTAATCAATGCAACGAAAGCGACAAAGAATCCCCGGATTTGTTAAAGAAGCAACAGAAGGAGATTGCTCCTAGTAGCAGCAGACAAA ACTATACTTATACACACGTGAGATCGCCTTCGTGGACTGAGGGAATAAGCTCTCCAGCAGCACATAAGAAGAAAGTGAAAGACGTTTCGAGATACATGAT AAACGCTGCAAAGGAGAATCCGCAGCTGGCTCAGAAACTTCACGATGTGCTGTTAGAGAGCGGTGTCGTTGCTCCGCCTAGCTTGTTTACCGAATTTGAG CAGTTGAGGTTGAAGGATGTTGATTCCGGTCCTGCTCGATTTTTGCCTCCTCTGCCTCGTAAAGAAACTTCCATGCAGTCGAGGCTATCAACTCCTGAGA CCATAGATGAGCCTAATCCGGCTCGATTCCTGCCACCTCTACCTCGGTGCAAACAGCATTCGGAAACAACTTCACCACAGGGTCAACTCGAGCCACTTAG ATTCGACGAGTCTGAAGCAACTCCTGTGAGCTCTGCGAAAAAAGTTCCGGTTGCTGCTGCTGTGGCGGCAGCAGCAGCAGTCGTCGCTTCTTCGATGGTG GTTGCTGCAGCAAGGCCAAACACCGAGTCGAGCCTCGAATTACCGATCGCTGCTGCTGCTGCAGCTGTCGTGGCATCAAGTGCAGCAGCTGTCGGTGTCA AAATCGATGGAGATGGGGACCACCGGGGTCAAGAACATGATACGATTGCGGTGAACTCGGAGGGAGAGAGAACATCTGATAGATCGACGGGGAACGACAG CTCCAGGTCGGATATCACTCTAGATGATGTTGCAGAGTGTGAGATCCCGTGGGAAGATATTACTTTGGGCGAACGAATTGGACTTGGTTCATATGGAGAA GTTTACCATGGAGAATGGCATGGAACTGAAGTTGCTGTGAAGAGATTCCTAGATCAGGATATTTCAGGGGAATCTTTAATGGAGTTCAAAAGTGAGGTCC AAATCATGAAGCGAGTTCGACATCCGAACGTGGTTCTTTTCATGGGAGCTGTGACGCGTGCTCCAAATCTTTCGATAGTTTCGGAGTTTCTTCCCAGAGG TAGTTTGTACCGACTACTTCACCGTCCTAACAACCAGTTGGACGAGAGAAGACGACTCCGGATGGCACTTGATGCAGCTCGGGGGATGAATTACCTCCAT AACTGCAGTCCAGTAATCGTTCATCGTGATTTGAAGTCTCCGAATCTCTTAGTTGATCGAAACTGGGTTGTGAAGGTATGCGATTTTGGTCTATCTAGAA TGAAGCACAGCACATTCCTCTCCTCGAGATCAACTGCAGGAACTGCCGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAGAAGTGCGA TGTTTATAGCTACGGGGTTATACTGTGGGAGCTATGCACGATGCAACAACCGTGGGGAGGAATGAATCCGATGCAAGTCGTTGGTGCTGTGGGATTCCAG CACCGACGACTCGAGATTCCAAACAATATGGATCCTGCTGTCGCAGATATTATTCAGAGTTGTTGGCAAACAGATCCTAAACTGAGGCCGACATTCGCAG AGATCATGGCTGCATTGAAGCCACTGCAAAAGCCTATAACCAGCAGCTCGAGACGTGCAAGAACCGCATCTGTGACGAGTCCATTGCCAGAAGATGCTGC AAAAGACCAGGCAGGATAG
AA sequence Show only first row Show all	>Lus10027247 pacid=23145508 polypeptide=Lus10027247 locus=Lus10027247.g ID=Lus10027247.BGIv1.0 annot-version=v1.0 MKSLLKKLHITNQQAISSSSEGSSNSPRASKFGGGDVSVSSSSHEHNKPFSGLSNWLSTVKINRKSTSPPNSSQGAKMKPNPNDSASSTSCGGTPRGGAE IDEEYQVQMALDLSTIEDPEAAQIEAVKQINSVGSDADLGKNTPVEVLAYRYWNYNALSYDDRIVDGFYDLYRISTDSQSDRMPSLIELQGALASESITW EAVLVDRTTDANLLKLERKSQEIASETRPEESLVLVDGNLVKKLADLVSGYMGGPVGDPENMSVAWRRLSYSLRATLGSMVLPLGSLTIGLARHRTLMFK VLADSVGIPSRLVKGNQFTGSDDVVINFVKLDDGREYIIDLMADPGTLIPSDAAGLHPEHDDLSFSASPLSRDIESSHLASSSSGVVSSFGETSTSEVGN TIASSNQCNESDKESPDLLKKQQKEIAPSSSRQNYTYTHVRSPSWTEGISSPAAHKKKVKDVSRYMINAAKENPQLAQKLHDVLLESGVVAPPSLFTEFE QLRLKDVDSGPARFLPPLPRKETSMQSRLSTPETIDEPNPARFLPPLPRCKQHSETTSPQGQLEPLRFDESEATPVSSAKKVPVAAAVAAAAAVVASSMV VAAARPNTESSLELPIAAAAAAVVASSAAAVGVKIDGDGDHRGQEHDTIAVNSEGERTSDRSTGNDSSRSDITLDDVAECEIPWEDITLGERIGLGSYGE VYHGEWHGTEVAVKRFLDQDISGESLMEFKSEVQIMKRVRHPNVVLFMGAVTRAPNLSIVSEFLPRGSLYRLLHRPNNQLDERRRLRMALDAARGMNYLH NCSPVIVHRDLKSPNLLVDRNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELCTMQQPWGGMNPMQVVGAVGFQ HRRLEIPNNMDPAVADIIQSCWQTDPKLRPTFAEIMAALKPLQKPITSSSRRARTASVTSPLPEDAAKDQAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18160			Protein kinase superfamily pro...		Lus10027247 [exp]	0	1
AT1G18160			Protein kinase superfamily pro...		Lus10038955 [exp]	1.0	0.9055
AT4G33625			unknown protein		Lus10007070 [exp]	1.4	0.8999
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10040595 [exp]	3.7	0.8615
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Lus10042298 [exp]	5.5	0.8745
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	7.7	0.8464
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	8.7	0.8309
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	8.7	0.8730
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	8.8	0.8344
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	9.7	0.8704
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	17.7	0.8474

Compare expression of checked genes

Lus10027247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.