Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18040 644 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G18150 636 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT1G73670 630 / 0 ATMPK15 MAP kinase 15 (.1) AT5G19010 618 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT2G42880 588 / 0 ATMPK20 MAP kinase 20 (.1) AT1G53510 568 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT3G14720 568 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT2G01450 566 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 300 / 4e-98 ATMPK4 MAP kinase 4 (.1) AT3G45640 292 / 3e-95 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038956 [exp] 788 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10041234 [exp] 597 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 585 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021784 [exp] 580 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10005568 [exp] 566 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10013702 [exp] 562 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10034601 [exp] 470 / 2e-163 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10027091 [exp] 303 / 7e-99 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 303 / 8e-99 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048600 [exp] 676 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 663 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.010G029700 [exp] 612 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 610 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.005G201800 [exp] 598 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.002G059900 [exp] 598 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.010G112200 [exp] 589 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.008G130000 [exp] 581 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1) Potri.011G102500 [exp] 573 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.001G381300 [exp] 573 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10027248 pacid=23145384 polypeptide=Lus10027248 locus=Lus10027248.g ID=Lus10027248.BGIv1.0 annot-version=v1.0 ATGGCTCATCACAAGAAGGGATCCCCGGAGGCGGACTTCTTCACCGAGTACGGTGAGGCGAGCAGGTACCAGATCCAGGAAGTGGTCGGGAAGGGGAGCT ACGGGGTGGTGGGGTCGGCGATCGAGACGCAGACGAACGAGAAGGTCGCGATCAAGAAGATTAACGACGTGTTTGAGCATGTATCTGACGCCACGAGGAT CCTACGAGAGATCAAACTGCTGAGGCTGCTGCGACACCCCGACATCGTGGAGATTAAGCACATCATGCTCCCGCCTTCTCGTCGAGAGTTCAAGGACATA TACGTGGTGTTCGAGCTGATGGAGTCCGATCTCCACCAGGTGATCAAGGCTAACGACGACCTGACTCCCGAGCATTACCAGTTTTTTTTGTACCAACTCC TCCGCGGATTGAAGTACATTCACACCGCAAATGTGTTTCACAGGGATTTGAAGCCAAAGAACATTCTTGCAAATGCTGATTGTAAACTGAAGATTTGTGA CTTTGGTTTGGCCCGAGTGTCGTTCAACGATGCTCCGTCCGCCATTTTTTGGACGGATTATGTTGCCACAAGATGGTATCGTGCCCCTGAGCTTTGTGGA TCATTTTTCTCTAAATACACTCCTGCAATTGACATATGGAGCATAGGATGCATATTTGCTGAAATGCTTACTGGAAAGCCACTGTTCCCTGGCAAAAATG TGGTTCATCAGTTGGATCTCATGACCGATTTACTCGGAACTCCACCCGTCGAATCGATTTCACGGATTCGAAACGAGAAGGCAAGAAGGTACCTTAGTAG CATGCGCAAGAAGCAACCGGTCCCATTCTCGCATAAGTTCCCCAATGTGGACCCTCTAGCACTCAGCTTGCTCGAAAGATTGCTCGCGTTCGATCCTAAA GATCGTCCGACTGCTGAGGAGGCGTTGACGGATTCTTATTTCAACGGCTTGTCGAACGTGGAACGCGAACCGTCCACTCACGCTATCTCGAAACTAGAGT TCGAGTTCGAGAGGAGGAAACTGACTAAAGATGATGTCAGAGAATTGATCTATAGAGAGATTTTAGAGTACCATCCTAAGATGTTAGAAGAGTATCTTAA AGGTGGTGAACAAACTAGTTTCTTGTATCCAAGAGAGAGAGTCCCTAAAGAGCAAGAAGGGGAAGAAGAAAATGAGCACGAGGGAAGAACAGTTGCAACC ACACTTGATAGCCCTCCAGAAGGAGGTGGCCAACATAGCAAGTCAACACAAAGGAGCCTCTTGAAGAGTGCTAGCATTAGTGCTTCCAAGTGCATTGGCG TCAAGCCAAAGAAGGAATCGTCGGAGGAAGTCATTACCGAGGTTAACGACGAAACTATCAATGAGTTGGTCGACAAGGTTGCTACTCTCCACAACACATA G
AA sequence Show only first row Show all	>Lus10027248 pacid=23145384 polypeptide=Lus10027248 locus=Lus10027248.g ID=Lus10027248.BGIv1.0 annot-version=v1.0 MAHHKKGSPEADFFTEYGEASRYQIQEVVGKGSYGVVGSAIETQTNEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI YVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCG SFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPPVESISRIRNEKARRYLSSMRKKQPVPFSHKFPNVDPLALSLLERLLAFDPK DRPTAEEALTDSYFNGLSNVEREPSTHAISKLEFEFERRKLTKDDVRELIYREILEYHPKMLEEYLKGGEQTSFLYPRERVPKEQEGEEENEHEGRTVAT TLDSPPEGGGQHSKSTQRSLLKSASISASKCIGVKPKKESSEEVITEVNDETINELVDKVATLHNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10027248 [exp]	0	1
					Lus10008440 [exp]	1.4	0.8940
					Lus10013672 [exp]	2.0	0.8876
AT1G53830		ATPME2	pectin methylesterase 2 (.1)		Lus10027556 [exp]	10.1	0.8722
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	10.8	0.8326
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	11.5	0.8657
					Lus10022805 [exp]	12.8	0.8657
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	14.1	0.8657
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10031433 [exp]	15.0	0.5632
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	15.2	0.8657
					Lus10011962 [exp]	16.2	0.8657

Compare expression of checked genes

Lus10027248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.