Plant FIBer expression Database

Lus10027249 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54310 212 / 5e-66 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1)
AT3G17660 199 / 5e-64 AGD15 ARF-GAP domain 15 (.1)
AT4G05330 111 / 7e-29 AGD13 ARF-GAP domain 13 (.1)
AT4G21160 102 / 1e-25 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
AT2G35210 102 / 3e-25 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2)
AT3G07940 102 / 4e-25 Calcium-dependent ARF-type GTPase activating protein family (.1)
AT5G46750 101 / 8e-25 AGD9, AGD8 ARF-GAP domain 9 (.1)
AT3G53710 101 / 1e-24 AGD6 ARF-GAP domain 6 (.1.2)
AT4G17890 100 / 3e-24 UBP20, AGD8 ARF-GAP domain 8 (.1.2)
AT5G13300 100 / 1e-23 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018445
[exp]
201 / 5e-62 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1)
Lus10011238
[exp]
200 / 1e-61 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1)
Lus10038582
[exp]
188 / 1e-56 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1)
Lus10000903
[exp]
103 / 1e-25 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2)
Lus10004562
[exp]
103 / 2e-25 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2)
Lus10024165
[exp]
99 / 1e-23 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1)
Lus10039538
[exp]
99 / 2e-23 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1)
Lus10004561
[exp]
97 / 4e-23 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2)
Lus10002760
[exp]
98 / 7e-23 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G036900
[exp]
223 / 3e-73 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1)
Potri.011G127000
[exp]
209 / 1e-64 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1)
Potri.001G406300
[exp]
209 / 4e-64 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1)
Potri.011G044100
[exp]
207 / 7e-64 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1)
Potri.004G035800
[exp]
193 / 1e-58 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1)
Potri.001G026400
[exp]
108 / 5e-28 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
Potri.T125706
[exp]
106 / 3e-26 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
Potri.003G198301
[exp]
106 / 3e-26 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
Potri.001G372000
[exp]
101 / 4e-25 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
Potri.011G098500
[exp]
101 / 6e-25 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01412 ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence
>Lus10027249 pacid=23145473 polypeptide=Lus10027249 locus=Lus10027249.g ID=Lus10027249.BGIv1.0 annot-version=v1.0
ATGAACGGGAAAGCATCCATTTCCAAAGACCTTAACGATAAACACATTAAGGTGTTGGAAGGCCTTATCAAACAACCACACAACAAAGAATGTGCCGATT
GTCACAATAAAGCACCTAGATGGGCAAGTGTGAACCTTGGAATCTTCATATGCATGCAATGCTCAGGGATTCATCGGAGTCTTGGTGTCCATATTTCACA
GGTGCGATCAATTACTTTGGACACATGGTTGCCGGAGCATGTGGCTCTTATGCAATATGTAGGAAATGAGAGGGCGAATAAGTATTGGGAAGCAAATCTA
CCTCCTTCCTATGACAAAAGTGGGATTGAGAAATTCATTCACAACAAGTACGTGGATAAGAAGTGGGCTTCAAGGACACTGCAACGGCCAACTCAAGCTT
TGGGGGAGAAGAAGAAGGCAGTGGAGACTTCAAATTTTAGTAAAAGTTCGGCCCCAAAGCAACATAGGAGGAGGCATTCTCTCGATGAGATGACTTTCAG
TAAATACATTGTTGAAATCGATCAACCGCCGCAGCTCAAATCTCGCGCGTTTTTGACTTTGCTGTCCCTTGCAGAGAGCTCCGATAATGCGAAGAAACAG
CGAACGGATTCCGACGATGATGGTGAGGTTCCACTTAAATCCGGCAAAGATTTAGGGACCATCGAGGAGGAGGATGAAGGCGGTCACGCCTCACCACTTG
ACAATGATTATGATGATCGTGAAGAGGATGAAAACTCCGATCCTGACTTGCAACATGATGGCTTCTAA
AA sequence
>Lus10027249 pacid=23145473 polypeptide=Lus10027249 locus=Lus10027249.g ID=Lus10027249.BGIv1.0 annot-version=v1.0
MNGKASISKDLNDKHIKVLEGLIKQPHNKECADCHNKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLDTWLPEHVALMQYVGNERANKYWEANL
PPSYDKSGIEKFIHNKYVDKKWASRTLQRPTQALGEKKKAVETSNFSKSSAPKQHRRRHSLDEMTFSKYIVEIDQPPQLKSRAFLTLLSLAESSDNAKKQ
RTDSDDDGEVPLKSGKDLGTIEEEDEGGHASPLDNDYDDREEDENSDPDLQHDGF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G54310 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.... Lus10027249
[exp]
0 1

Lus10027249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.