Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18090 489 / 2e-168 5'-3' exonuclease family protein (.1.2) AT1G29630 283 / 2e-86 5'-3' exonuclease family protein (.1.2.3) AT5G26680 79 / 1e-15 5'-3' exonuclease family protein (.1.2) AT3G28030 49 / 1e-05 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT1G01880 45 / 0.0001 5'-3' exonuclease family protein (.1.2) AT2G02550 40 / 0.0008 PIN domain-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038958 [exp] 533 / 0 AT1G18090 315 / 5e-103 5'-3' exonuclease family protein (.1.2) Lus10011991 [exp] 282 / 3e-86 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10002782 [exp] 269 / 3e-81 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10004608 [exp] 231 / 4e-70 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10000270 [exp] 80 / 5e-16 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039423 [exp] 54 / 1e-07 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10039424 [exp] 53 / 5e-07 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10027451 [exp] 50 / 5e-06 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10005744 [exp] 47 / 3e-05 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041400 [exp] 575 / 0 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 290 / 4e-89 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.013G000700 [exp] 88 / 1e-18 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.017G070500 [exp] 51 / 2e-06 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.014G077300 [exp] 47 / 4e-05 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF00752 [flax] [poplar] XPG_N XPG N-terminal domain CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Lus10027250 pacid=23145439 polypeptide=Lus10027250 locus=Lus10027250.g ID=Lus10027250.BGIv1.0 annot-version=v1.0 ATGGGAATCAAAGATCTGCTGAGGTTCATGAAACCGTATATTGAGCCAGTCCACATCAAGAAATACGCCGGCAAACGAGTGGGCATCGATGCGTATTGCT GGCTGCACAAAGGAGCTTATTCATGTAGCATGGAGATCTGTCTCGATTCGAACAGCGAGAAGAAGTTCCGATACTTGGATTACTTCATGCACCGCATCAA TCTTCTTATTTACCACAAGATCATTCCTGTTGTTGTGCTGGATGGAGCTAATATACCTTGTAAATCATCCACGGAACATGATCGTCGGAGGAAAAGAGAA GCTAATCATGAGTTGGCAGTAGCAAAGCTCAAAGAAGGGGACGCTAGTGCTGCAAGGGAGTTCTTTCAGAAAGCAGTAAACATCACTCCATCAATGGCGT ATCAGTTGATTAAGGTACTGAAATCCAAAAAGGTAGAGTTCGTGGTAGCTCCATACGAGGCCGATGCACAGCTAGCCTATCTATCAAGCCTTGGAGAAGC TAAAGGTGGAGTATCAGCTGTGATCACAGAGGACAGTGATCTGCTGGCCTATGGTTGTCCAGCTACTATCTTCAAGATGGATCAACATGGCAATGGCGAG GAGCTGATCCTCGATGTTGTGTTCGATCCAGAAGCGTCTCGTAAGCCATCATTTCGACATTTCGATATGGAGCTGTTCACAGGCATGTGTGTCCTAGCTG GTTGTGATTTTCTGTCATCGGTTCCTGGAATCGGCATAGTAAAGGCTCATACGATCGTTTCCAAGTACCGAAGCTTGGACAGGGTTTTATCAGTGTTGAA GCTGGACAAAGGCAGTCAGATGCCAGACGATTACATAAATTCTTTCAGAGAAGCACTTGCAGTTTTCCGACATGCTACAATTTACGATCCGAAGGTGAAA TCAATCAAGCACATGAACCCCCTTCCACAAGATCTTGCAGAATACTTTGCTGGGAAGCTGGATTTTCTCGGACCAGAAATACCTGCTTCAGTAGCAACTG CAATAGCTGAAGGAAACACAAACCCTTCTAATATGGAGCCCTTTGATCTGCTGTTGTCCAGTTCAACCTCTGAAACAGTCGTCACTGAAGTCCTCTCGGA TTCTTGGAATAAACCTGAAGTTGTCAAGATCTTCAGAAGAAAATGCAGCTTCGTGGATGCAGAAGCGTTCCACGAAAAGGAGAATCTCTGTGAAAGCAAG TACATTGGTGAAGCATCGGCATTCCACAGAATAGCAGTGTCATCATCAGAAATCCAAGCAGAAACCATAACTTCCATGGCTGCTCCTCCTGTTGAAGTTC AACTGAAGATTCATAACAACCCTTTCATCATCAAGAAATCTTCATCATTGGAGGAGAAGTCTTCCATCTCTTGCATAAGTCAATGCGATAATGGTGATAA TAATGTTGTTACTCCGGAAAGCAGCACCAAGAAGAGGAAGCTGTTGATGATGAACATCGGCGAAACATCAGAGGAGGTGGTGACTGAGCTGCAGAGTGTG GACATGTATGATGAAAAGGAGTCTCAGGAGAGTGTGAACTCTAAGATTAAAGGAGGGGGCTCAGTTGGTAGAGTTCAGAAGGGGAAAAAGAAAGGTTCTT TGCCTGGTTCTTGTAGCAATAATAGCTCCATCTTGAGCTTTTTCTCTAGAGTGTAG
AA sequence Show only first row Show all	>Lus10027250 pacid=23145439 polypeptide=Lus10027250 locus=Lus10027250.g ID=Lus10027250.BGIv1.0 annot-version=v1.0 MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYCWLHKGAYSCSMEICLDSNSEKKFRYLDYFMHRINLLIYHKIIPVVVLDGANIPCKSSTEHDRRRKRE ANHELAVAKLKEGDASAAREFFQKAVNITPSMAYQLIKVLKSKKVEFVVAPYEADAQLAYLSSLGEAKGGVSAVITEDSDLLAYGCPATIFKMDQHGNGE ELILDVVFDPEASRKPSFRHFDMELFTGMCVLAGCDFLSSVPGIGIVKAHTIVSKYRSLDRVLSVLKLDKGSQMPDDYINSFREALAVFRHATIYDPKVK SIKHMNPLPQDLAEYFAGKLDFLGPEIPASVATAIAEGNTNPSNMEPFDLLLSSSTSETVVTEVLSDSWNKPEVVKIFRRKCSFVDAEAFHEKENLCESK YIGEASAFHRIAVSSSEIQAETITSMAAPPVEVQLKIHNNPFIIKKSSSLEEKSSISCISQCDNGDNNVVTPESSTKKRKLLMMNIGETSEEVVTELQSV DMYDEKESQESVNSKIKGGGSVGRVQKGKKKGSLPGSCSNNSSILSFFSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	0	1
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	1.0	0.9647
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	2.0	0.9371
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	2.4	0.9449
					Lus10038266 [exp]	4.2	0.9165
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	5.0	0.9314
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	5.3	0.9305
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	5.5	0.9434
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	6.5	0.9308
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	7.7	0.8969
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	9.4	0.9240

Compare expression of checked genes

Lus10027250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.