Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18200 414 / 3e-144 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 362 / 2e-123 WAT1 Walls Are Thin 1 (.1.2) AT3G53210 295 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 209 / 8e-64 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G45870 193 / 8e-58 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G19185 185 / 2e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G45370 184 / 2e-54 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT5G07050 180 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 179 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 176 / 5e-51 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038959 [exp] 601 / 0 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10024301 [exp] 334 / 8e-112 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10010647 [exp] 277 / 2e-90 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10041801 [exp] 246 / 7e-79 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10028351 [exp] 201 / 3e-62 AT3G53210 311 / 1e-105 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023211 [exp] 201 / 6e-61 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030168 [exp] 197 / 4e-59 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10034776 [exp] 197 / 5e-59 AT4G19185 525 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033316 [exp] 197 / 5e-59 AT4G19185 520 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042900 [exp] 459 / 5e-162 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G233600 [exp] 364 / 3e-124 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 342 / 1e-115 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.007G017800 [exp] 314 / 1e-104 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.008G165600 [exp] 202 / 3e-61 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 200 / 2e-60 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G453000 [exp] 198 / 9e-60 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 196 / 6e-59 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 196 / 6e-59 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 195 / 1e-58 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10027251 pacid=23145526 polypeptide=Lus10027251 locus=Lus10027251.g ID=Lus10027251.BGIv1.0 annot-version=v1.0 ATGGTATCAGAAAGAGTGAAACTTATTCTGGGATTGCTGGTTCTTCAGCTCTGCTTCTCAGGGTTCCACATTGTCTCAAGGGTTGCACTCAACATTGGAG TCAGCCAAGTTGTATACCCTGTTTACAGAAACACCATTGCCCTCTTCCTCTTGGCTCCCTTCGCCTACTTCTTGGAGAAGAAGGAAAGGCCACCACTTAC ATTGGCCTTGCTGGTTCAGTTCTTCCTTCTGGCATTAGTTGGGATCACAGCAAACCAAGGGTTCTATCTGCTGGGATTGTATTATGCATCTCCAACATTT GCATCAGCAATGCAGAACTCAGTCCCTGCAATCACTTTCCTCATGGCTTCTGTTCTTGGAGTGGAGCAAGTGAATCTGAGGAGAAGAGACGGGTTGGCCA AAGTGGTAGGGACAATTGCATGCATAGGAGGAGCCACAATCATCACTCTTTACAAAGGTCCTCCTCTCCTCCACAACCATGGCACTAACAAGAACCTAGA GCAGCCATTGATGGAGTTAGATGACAGTAATAAGAAGTTGCAGAACTGGACATGGGGTTGCATCTACCTCCTTGGCCACTGCCTCTCCTGGGCTGGTTGG ATGGTATTTCAGGCTCCAGTGCTGAAGAAGTACCCTGCAAAGCTGACAATGACATCTTTCACATGCTTCTTTGGTCTGATCCAGTTCCTGCTCATAGCTT CCTTTGTCGAGACCGACTTGAACAACTGGAAGCTCCATTCCCTGGAAGAGCTTTTCACCATCTTATACGCGGGAATTGTGGCATCCGGGATAGTGATTTC ACTTCAGACATGGTGCATTCAGAAAGGAGGTCCAGTCTTTGTTGCAGTTTTCCAGCCATTGTCCACCATCTTAGTTGCTGTCATGGCTGCTTTGATCCTT GGTGATCAGCTCTACTCTGGAGGGATGATTGGAGCAGTGCTGATAATGTTTGGTCTGTACTGTGTCCTCTGGGGAAAGAATGAAGAGAAAAGAAGAACAA TAATACTGTCACAAGACAATAATTATTGTAAGGAGGATGACAGTTTGACTACCAACCTTCTGCAACAGCATGATCAAATCAATAAAGACACTTACTTGCC ATGGAAAGATAATCTATACGATACAGACAAGTTCTGCAAAATTTCATTATTGGTTCAAACTTGGATCCAGTCCATAAGTAGATTTTGGTCTAGCGAGATA TAA
AA sequence Show only first row Show all	>Lus10027251 pacid=23145526 polypeptide=Lus10027251 locus=Lus10027251.g ID=Lus10027251.BGIv1.0 annot-version=v1.0 MVSERVKLILGLLVLQLCFSGFHIVSRVALNIGVSQVVYPVYRNTIALFLLAPFAYFLEKKERPPLTLALLVQFFLLALVGITANQGFYLLGLYYASPTF ASAMQNSVPAITFLMASVLGVEQVNLRRRDGLAKVVGTIACIGGATIITLYKGPPLLHNHGTNKNLEQPLMELDDSNKKLQNWTWGCIYLLGHCLSWAGW MVFQAPVLKKYPAKLTMTSFTCFFGLIQFLLIASFVETDLNNWKLHSLEELFTILYAGIVASGIVISLQTWCIQKGGPVFVAVFQPLSTILVAVMAALIL GDQLYSGGMIGAVLIMFGLYCVLWGKNEEKRRTIILSQDNNYCKEDDSLTTNLLQQHDQINKDTYLPWKDNLYDTDKFCKISLLVQTWIQSISRFWSSEI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	0	1
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	2.8	0.9512
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	4.9	0.9347
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	5.5	0.9399
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	6.0	0.9401
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	6.9	0.9367
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	7.1	0.9366
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10031885 [exp]	7.5	0.9281
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031151 [exp]	9.6	0.9031
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	10.6	0.9129
AT3G01490			Protein kinase superfamily pro...		Lus10022227 [exp]	10.6	0.8967

Compare expression of checked genes

Lus10027251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.