Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18060 980 / 0 transducin family protein / WD-40 repeat family protein (.1) AT2G01330 879 / 0 nucleotide binding (.1.2) AT5G52820 69 / 4e-12 WD-40 repeat family protein / notchless protein, putative (.1) AT2G43770 64 / 6e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 61 / 9e-10 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G60940 61 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G21390 60 / 4e-09 Coatomer, alpha subunit (.1) AT4G32551 58 / 2e-08 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT4G29830 57 / 2e-08 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 57 / 2e-08 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038960 [exp] 1215 / 0 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10042944 [exp] 907 / 0 AT3G18060 888 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10032444 [exp] 905 / 0 AT3G18060 884 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10039597 [exp] 83 / 2e-16 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 72 / 7e-13 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10021059 [exp] 69 / 6e-12 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 66 / 1e-11 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 66 / 2e-11 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 66 / 4e-11 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G049200 [exp] 1087 / 0 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.015G041200 [exp] 1085 / 0 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G058000 [exp] 74 / 8e-14 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.018G033300 [exp] 67 / 2e-11 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.006G045800 [exp] 59 / 5e-09 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.015G070900 [exp] 59 / 5e-09 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G221000 [exp] 59 / 6e-09 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G250200 [exp] 58 / 7e-09 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.002G212800 [exp] 57 / 1e-08 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G096900 [exp] 57 / 1e-08 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10027252 pacid=23145499 polypeptide=Lus10027252 locus=Lus10027252.g ID=Lus10027252.BGIv1.0 annot-version=v1.0 ATGCCGCAGTTATCGGAGACTTACCCATCTGCTCCGTCCACCGACCGCGGCAGGGGGATCCTCATCTCCGGCCACCCGAAGACCAACTCAATCCTCTACA CAAACAACCGCTCCGTCCTCATCCTCAACCTCGACAACCCGCTCGACGTCTCCGTATACGGAGACCATGCTTATCCGGCCACTGTCGCCCGATTCTCCCC CAACGGCGAGTGGATCGCCTCCGCGGATGCCTCCGGCACCGTCAGGATCTGGGGCGCGTACAATGATCATGTCCTCAAGAAGGAGTTCAAGGTCCTCACT GGTAGGATCGACGATCTCCAGTGGTCTCCTGATGGGATGAGGATCGTCGCCTGTGGCGACGGCAAGGGTAAATCGCTGGTTCGAGCTTTCATGTGGGATT CGGGGACTAATGTAGGGGAATTCGACGGTCATTCGAGGCGTGTGTTGAGCTGTGCGTTTAAGCCGACAAGGCCGTTTCGGATTGTGACCTGTGGTGAGGA TTTCTTGGTGAATTTCTACGAAGGGCCTCCTTTTAAGTTCAAGCTTTCTCACAGGGATCATTCGAATTTCGTCAACTGTGTGAGGTTTTCGCCGGATGGA AGCAAGTACATTAGTGTTAGCTCTGATAAGAAAGGACTGATATTTGACGGGAAGACTGCTGAAAAGATTGGGGAATTGTCTTCAGCTGAAGGTCACAAGG GTAGCATTTATGCTGCTAGTTGGAGTCCTGATAGCAAACAGGTACTTACTGTTTCTGCTGACAAGTCGGCAAAAGTGTGGGAGATCTCCAGTGACGGTAG TGGGACATTGAAGAAGACTTTGACGTGTGGAGAATCGGGCGGAGTTGATGACATGCTGGTTGGTTGTCTATGGCAGAACGATCATCTTGTCACTGTTTCG CTTGGTGGCACGATTAGTATCTTCTCCGCTAGTGATCTTGAGAAGAGTCCGGTCCAAATATCCGGACATCTGAAGAATGTTACTTCTTTAGCTGTGCTTA ATAGTGTTCCGAGGACTATACTGTCAAGTAGCTATGATGGTTTGATAATTAAGTGGGTTCAAGGTACTGGGTACAGCGGTAAATTGCGGAGGAAGGAGAA TAGTCAGATCAAATCCTTAGCTGCCATTGCTGAAGAGATTGTTACTTCTGGATTCGACAACAAGGTATGGAGAGTTCAATTAAGTGGGGAGCAGTGTGGA GATTCAGAATGCGTTGACATTGGGAGTCAACCAAAGGACTTCAGTCTTGCTCTTAACTGTCCCGAGCTAGTTCTGGTTACAATTGATTCTGGCGTCGTCA TGCTCCATGGCACGAAAGTAATCTCAACCTTTAATCTCGGGTTTACTGTAACTGCATCGGCAGTTGCACCAGATGGGAGTGAAGCAATCATAGGTGGGCA AGATGGCAAGCTGCATGTCTATTCTATCACAGGCGACACACTTACAGAAGTGGCTGTGCTCGAAAAACACCGTGGTGCCATCACTGTGATTAATTACTCT CCAGATACATCCATGTTTGCATCTGGCGATTCAAATAGAGAGGCTCTAGTATGGGATCGGGTCTCACGAGAGGTGAAGCTTAAGAACATGTTGTACCACA CAGCCCGGATAAACTGCCTTGCCTGGTCTCCTGACAATAGGATGGTCGCTACAGGATCCCTCGACACATGTATCATTGTATACGAATTAGACAAGCCGGT TTCTAGTAGGATGACTATTAAGGGAGCTCACCTCGGCGGGGTTTACGGATTAGCATTCGTGGATGAAGATAGTGTTGCAAGTTCTGGAGAAGATGCTTGT GTTCGGGTTTGGAGGTTAACCCCTCAATGA
AA sequence Show only first row Show all	>Lus10027252 pacid=23145499 polypeptide=Lus10027252 locus=Lus10027252.g ID=Lus10027252.BGIv1.0 annot-version=v1.0 MPQLSETYPSAPSTDRGRGILISGHPKTNSILYTNNRSVLILNLDNPLDVSVYGDHAYPATVARFSPNGEWIASADASGTVRIWGAYNDHVLKKEFKVLT GRIDDLQWSPDGMRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKFKLSHRDHSNFVNCVRFSPDG SKYISVSSDKKGLIFDGKTAEKIGELSSAEGHKGSIYAASWSPDSKQVLTVSADKSAKVWEISSDGSGTLKKTLTCGESGGVDDMLVGCLWQNDHLVTVS LGGTISIFSASDLEKSPVQISGHLKNVTSLAVLNSVPRTILSSSYDGLIIKWVQGTGYSGKLRRKENSQIKSLAAIAEEIVTSGFDNKVWRVQLSGEQCG DSECVDIGSQPKDFSLALNCPELVLVTIDSGVVMLHGTKVISTFNLGFTVTASAVAPDGSEAIIGGQDGKLHVYSITGDTLTEVAVLEKHRGAITVINYS PDTSMFASGDSNREALVWDRVSREVKLKNMLYHTARINCLAWSPDNRMVATGSLDTCIIVYELDKPVSSRMTIKGAHLGGVYGLAFVDEDSVASSGEDAC VRVWRLTPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	0	1
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	1.0	0.8879
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10042160 [exp]	2.4	0.8526
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	4.9	0.8053
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	4.9	0.8460
AT1G53290			Galactosyltransferase family p...		Lus10013683 [exp]	5.5	0.8151
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	6.3	0.8221
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10036452 [exp]	6.9	0.7883
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10036266 [exp]	8.7	0.7737
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	9.4	0.8428
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	10.5	0.8000

Compare expression of checked genes

Lus10027252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.