Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18050 292 / 1e-97 unknown protein AT4G28100 206 / 1e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038961 [exp] 524 / 0 AT3G18050 308 / 6e-104 unknown protein Lus10039742 [exp] 207 / 1e-64 AT4G28100 399 / 2e-140 unknown protein Lus10018524 [exp] 205 / 8e-64 AT4G28100 397 / 1e-139 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040900 [exp] 348 / 5e-120 AT3G18050 347 / 2e-119 unknown protein Potri.012G049000 [exp] 342 / 3e-117 AT3G18050 352 / 2e-121 unknown protein Potri.019G118300 [exp] 209 / 2e-65 AT4G28100 408 / 5e-144 unknown protein Potri.013G148700 [exp] 208 / 4e-65 AT4G28100 377 / 8e-132 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027253 pacid=23145527 polypeptide=Lus10027253 locus=Lus10027253.g ID=Lus10027253.BGIv1.0 annot-version=v1.0 ATGGCGATCCCTAATCTCCTCCTCCACTTCCTCCTCTTCCCTCTCATAACCTCAGCCTTACCAGCACCTGACCCGGAAACCATCCAACAGCTCCTCCCAA CCCACTCCCCACCTTCCACCATCCCAGCATTTCCCGAACAATCCAACCTCCAATCCTGCCCTCTCAACCTCCCGCCGGCTCTTTTCCCCGGCGTCAAATC CGCCTGCTCTGGCGCCTCCGCCACCCTCCACAGGACAAGATGCTGCCCTGTTCTCGCAGCGTGGCTGTACTCCGCCTACTCCTCCACCGCACTATCCAGA CCCAACCGGGTCGACCCGGCCGGAAACCGGACCAGATACGACATGCCGTTGCTCCCGGACGACTCGGAGGACTGCGTGGACTCACTGGAGAAAGGGTTGA CGGAGAAAGGGATTGAGCTTCCTAAACCTAACGAGACGTGCGACGCCGTTTACTGCTACTGTGGCATTCGGCTCCACCGTTTCACCTGCCCGGCGGCATT CTCGATGAGTGAAGGGAATCTCGTCGGCGATCGGCGCGTGAGGAGGCTGGAGAAGGATTGTTTGAGCTCGTCAAATGGGTTTTCTTCCTCTGGGATTGGT GGCTGCTCCAAGTGCTTGGACACGCTCAATTCCCTTAACAGCAATCACAATAAGGAAGCTTGGAACTCAAGCAAGCCTGACGAGAGGACCACCAAGATGC AGAACAAGGACTGCCAGCTAATGGGCCTCACATGGCTCCTCGCCAAGAACCACACTGCCTACATTCACTCGGTCTCCGCCGTCCTCCGAGCGATCATGTT GCATGATGATCGAAGCCTCTCGGAGCCCCAGTCGTGCTCTGTCAACAGCGACGGAATGCCTCTGGCTGTTGATTCGTCTGAGATACAGAGCGCTTCGTGG TCGATTAATGCTCGTCGAAGAGCCGATGTGTTGTTGTTAGTTGTTGGCCTTCTTTGTTTGTTTAATATGGTAGTTGTTGTAGTTTTGTAA
AA sequence Show only first row Show all	>Lus10027253 pacid=23145527 polypeptide=Lus10027253 locus=Lus10027253.g ID=Lus10027253.BGIv1.0 annot-version=v1.0 MAIPNLLLHFLLFPLITSALPAPDPETIQQLLPTHSPPSTIPAFPEQSNLQSCPLNLPPALFPGVKSACSGASATLHRTRCCPVLAAWLYSAYSSTALSR PNRVDPAGNRTRYDMPLLPDDSEDCVDSLEKGLTEKGIELPKPNETCDAVYCYCGIRLHRFTCPAAFSMSEGNLVGDRRVRRLEKDCLSSSNGFSSSGIG GCSKCLDTLNSLNSNHNKEAWNSSKPDERTTKMQNKDCQLMGLTWLLAKNHTAYIHSVSAVLRAIMLHDDRSLSEPQSCSVNSDGMPLAVDSSEIQSASW SINARRRADVLLLVVGLLCLFNMVVVVVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18050			unknown protein		Lus10027253 [exp]	0	1
AT3G18050			unknown protein		Lus10038961 [exp]	1.0	0.9103
AT2G41990			unknown protein		Lus10003341 [exp]	2.8	0.8337
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	3.2	0.8457
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	4.0	0.8176
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Lus10037721 [exp]	6.3	0.7752
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042203 [exp]	6.5	0.8188
AT4G28760			Protein of unknown function (D...		Lus10022842 [exp]	8.8	0.7900
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10004944 [exp]	9.5	0.7924
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10039797 [exp]	9.9	0.8348
					Lus10017791 [exp]	10.0	0.8233

Compare expression of checked genes

Lus10027253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.