Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18490 313 / 4e-107 Protein of unknown function (DUF1637) (.1) AT5G39890 196 / 3e-61 Protein of unknown function (DUF1637) (.1) AT5G15120 186 / 4e-57 Protein of unknown function (DUF1637) (.1) AT2G42670 177 / 2e-54 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) AT3G58670 172 / 1e-52 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038962 [exp] 523 / 0 AT1G18490 332 / 1e-114 Protein of unknown function (DUF1637) (.1) Lus10020711 [exp] 198 / 1e-62 AT3G58670 386 / 8e-138 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10017645 [exp] 197 / 3e-62 AT3G58670 390 / 2e-139 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10015360 [exp] 200 / 4e-62 AT5G39890 316 / 6e-108 Protein of unknown function (DUF1637) (.1) Lus10033603 [exp] 192 / 2e-60 AT3G58670 385 / 3e-137 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10029828 [exp] 184 / 7e-55 AT3G58670 322 / 4e-109 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10003861 [exp] 171 / 2e-51 AT5G39890 229 / 4e-74 Protein of unknown function (DUF1637) (.1) Lus10013620 [exp] 171 / 4e-51 AT5G39890 225 / 7e-73 Protein of unknown function (DUF1637) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055600 [exp] 357 / 2e-124 AT1G18490 341 / 2e-118 Protein of unknown function (DUF1637) (.1) Potri.012G057400 [exp] 341 / 1e-118 AT1G18490 329 / 3e-114 Protein of unknown function (DUF1637) (.1) Potri.004G129400 [exp] 207 / 2e-65 AT5G39890 338 / 1e-117 Protein of unknown function (DUF1637) (.1) Potri.013G064200 [exp] 199 / 2e-62 AT5G15120 238 / 4e-78 Protein of unknown function (DUF1637) (.1) Potri.019G038851 [exp] 198 / 4e-62 AT5G39890 225 / 6e-73 Protein of unknown function (DUF1637) (.1) Potri.017G079400 [exp] 189 / 4e-59 AT5G39890 300 / 4e-103 Protein of unknown function (DUF1637) (.1) Potri.004G058000 [exp] 187 / 3e-58 AT3G58670 320 / 1e-111 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Potri.011G067300 [exp] 184 / 4e-57 AT2G42670 316 / 8e-110 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF07847 [flax] [poplar] PCO_ADO PCO_ADO
Representative CDS sequence Show only first row Show all	>Lus10027254 pacid=23145422 polypeptide=Lus10027254 locus=Lus10027254.g ID=Lus10027254.BGIv1.0 annot-version=v1.0 ATGTTGTCAAAAATCCAAATTGCAGCAGATAAATCCAGAAATCTGATTTGGGCATCGCCTCAATCTCACTTGTTCACTGCAAGGAGGAGAAAAAGCAGCA GCAGAATCAACATGGTGATGAACCAGTCGTCCTCTAAAGTTCAGTCTCTTTACCAGCTATGCAAGTCCACTCTTTCTCCCCCGTCATCCGCCGCTGCCGC CGTTCCTCCGTCATCCTCCGCCGTCCAGAAAATCTGTTCTCTTCTGGATTCAATTGGCCCTGATGATGTGGGGCTTAGAGAGGAAACTTCAGATGATGAT CGAGGGCATGGCATTTTCGGGCTTCAACGTCTGAGTCGAGTTGCTCGATGGTCTCAACCGATAACGTACATAGACGTTTACGAATGCGATAGTTTTACGA TGTGTATATTCTGCTTTCCAACTTCATCGGTTATCCCGCTTCACGATCACCCGGGTATGACAGTCTTCAGCAAAGTTCTGTATGGATCTCTTCATGTTAA AGCTTATGACTGGGTTGAGCCAGCCCGCATCTCTGAAAGCAAGCAGCTTGGTGTACCACCTTCAGCAAGGCTAGCAAAGTTTACCGTCGACAAAGTTCTG ATGGCTCCCTGCAGAACATCGGTCTTGTATCCCAGTGCCGGTGGGAATCTGCATTGCTTCACTGCCTTGACACCTTGTGCGGTCCTCGATATTCTCACGC CTTCGTACAACGAACCCACTGGAAGGAAGTGTACTTATTACCGCGACTACCCGGAGTCCACATTGTGTAAGAACAAAGCGATAAGCGGAGCGGCGGTAAA AGATGGAGGTGCAGAGGATTACGCTTGGCTAGCGGAGATCGAAACGCCAGATGATCTTCATATGCGTTCGGGTCGATACACCGGCCCTTATATTCATCTG TAG
AA sequence Show only first row Show all	>Lus10027254 pacid=23145422 polypeptide=Lus10027254 locus=Lus10027254.g ID=Lus10027254.BGIv1.0 annot-version=v1.0 MLSKIQIAADKSRNLIWASPQSHLFTARRRKSSSRINMVMNQSSSKVQSLYQLCKSTLSPPSSAAAAVPPSSSAVQKICSLLDSIGPDDVGLREETSDDD RGHGIFGLQRLSRVARWSQPITYIDVYECDSFTMCIFCFPTSSVIPLHDHPGMTVFSKVLYGSLHVKAYDWVEPARISESKQLGVPPSARLAKFTVDKVL MAPCRTSVLYPSAGGNLHCFTALTPCAVLDILTPSYNEPTGRKCTYYRDYPESTLCKNKAISGAAVKDGGAEDYAWLAEIETPDDLHMRSGRYTGPYIHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18490			Protein of unknown function (D...		Lus10027254 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	8.9	0.7194
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10032666 [exp]	15.2	0.7232
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026480 [exp]	17.4	0.6576
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	25.8	0.7106
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	30.2	0.7176
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10007838 [exp]	32.8	0.6504
AT5G18590			Galactose oxidase/kelch repeat...		Lus10034163 [exp]	34.3	0.7064
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	35.4	0.6800
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	35.7	0.6838
AT2G26270			unknown protein		Lus10009795 [exp]	40.9	0.6779

Compare expression of checked genes

Lus10027254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.