Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23810 139 / 1e-39 TET8 tetraspanin8 (.1) AT4G28050 137 / 2e-39 TET7 tetraspanin7 (.1) AT4G30430 118 / 1e-31 TET9 tetraspanin9 (.1) AT1G18520 115 / 1e-30 TET11 tetraspanin11 (.1) AT5G23030 112 / 1e-29 TET12 tetraspanin12 (.1) AT3G12090 110 / 1e-28 TET6 tetraspanin6 (.1) AT1G63260 108 / 4e-28 TET10 tetraspanin10 (.1.2.3) AT3G45600 103 / 5e-26 TET3 tetraspanin3 (.1) AT5G60220 102 / 3e-25 TET4 tetraspanin4 (.1) AT4G23410 96 / 3e-23 TET5 tetraspanin5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038964 [exp] 360 / 4e-126 AT4G28050 203 / 2e-64 tetraspanin7 (.1) Lus10008891 [exp] 144 / 8e-42 AT2G23810 377 / 5e-133 tetraspanin8 (.1) Lus10023216 [exp] 141 / 2e-40 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10019965 [exp] 136 / 1e-38 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10015494 [exp] 130 / 1e-36 AT2G23810 370 / 2e-130 tetraspanin8 (.1) Lus10038473 [exp] 112 / 2e-29 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10009607 [exp] 107 / 1e-27 AT1G18520 217 / 5e-70 tetraspanin11 (.1) Lus10000869 [exp] 107 / 2e-27 AT1G18520 218 / 2e-70 tetraspanin11 (.1) Lus10009605 [exp] 105 / 1e-25 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055700 [exp] 150 / 6e-44 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.018G099800 [exp] 148 / 3e-43 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.006G177900 [exp] 140 / 2e-40 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.008G041600 [exp] 121 / 6e-33 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.010G220300 [exp] 120 / 1e-32 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.009G015100 [exp] 115 / 9e-31 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.015G055900 [exp] 100 / 4e-25 AT1G18520 163 / 3e-49 tetraspanin11 (.1) Potri.001G129300 [exp] 97 / 1e-23 AT4G28050 162 / 1e-48 tetraspanin7 (.1) Potri.001G107200 [exp] 96 / 2e-23 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3) Potri.006G150400 [exp] 94 / 1e-22 AT2G19580 367 / 5e-129 tetraspanin2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10027256 pacid=23145359 polypeptide=Lus10027256 locus=Lus10027256.g ID=Lus10027256.BGIv1.0 annot-version=v1.0 ATGATCCTCGGAGCCGCCGTAATAGCCACGTCGGGGATCATGCAAATAACTGAATACAACTCCGACAGCCACAAGTTTCTGGAGACTCCATTGTTGATCA TGGGATGTTTTCTAGTCTTCATTTCGATGCTCGGCTTCATCGGTTCGTGTTGCAACCTAAAATCCGTTTTGTGGATGTACTCATTTGTGTCGTTCTGTAT GGTATTGGCCGCATTGGGTTTCATCGCCTTTGCGTTCATTGTCACCAATGTGACCGCCGGAGAAGTACTTTCCGGAGCCAGATACGGTAAATACCGGTTG GGGGATTACTCGAGTTGGTTGAGAGATCATTTTGCTGATGCAAACCATTGGAGAAAGGTCAAGAGTTGTTTGATTGAGGCTGATGTTTGTGACAAATTTG ATCCTCGTGAGAAGTTATTGCCCATTTTACAGCCACCAAAAGACTGCGGATTCGTCGAAACAGGGAACGGGCGGTGGGTTATGCCACAAACCAAACTACA ACGATCGTCGCCAGCCAATACCAAGGACATAGACTGCACGACATACAACAACGACCCGAAGAAGAGGTGCTTCGATTGCGAATCGTGCAAATGCCGCGCG TTGGACCACATCAGGAAAGACTGGATGACGTTAGCCCGCCTAGTACAAGGAGAGGGATCCAGCCTAGTACCAAGAACTACAAAGGGAATTCCAAAGAGTG GTGTTTTTTCGATTTCGTATTGTTGGTTTTTTCGTTCGCTCGGGGTGATCAACCCCTATGATGATGGCATCACCGATCTCACCTGA
AA sequence Show only first row Show all	>Lus10027256 pacid=23145359 polypeptide=Lus10027256 locus=Lus10027256.g ID=Lus10027256.BGIv1.0 annot-version=v1.0 MILGAAVIATSGIMQITEYNSDSHKFLETPLLIMGCFLVFISMLGFIGSCCNLKSVLWMYSFVSFCMVLAALGFIAFAFIVTNVTAGEVLSGARYGKYRL GDYSSWLRDHFADANHWRKVKSCLIEADVCDKFDPREKLLPILQPPKDCGFVETGNGRWVMPQTKLQRSSPANTKDIDCTTYNNDPKKRCFDCESCKCRA LDHIRKDWMTLARLVQGEGSSLVPRTTKGIPKSGVFSISYCWFFRSLGVINPYDDGITDLT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23810		TET8	tetraspanin8 (.1)		Lus10027256 [exp]	0	1
					Lus10002009 [exp]	2.6	1.0000
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	3.2	1.0000
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	4.6	1.0000
					Lus10003763 [exp]	5.3	1.0000
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10028664 [exp]	6.6	1.0000
					Lus10006079 [exp]	7.1	1.0000
					Lus10010414 [exp]	8.1	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	8.8	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	8.9	1.0000
					Lus10033171 [exp]	9.5	1.0000

Compare expression of checked genes

Lus10027256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.