Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23050 1004 / 0 AAE17 acyl-activating enzyme 17 (.1) AT1G55320 662 / 0 AAE18 acyl-activating enzyme 18 (.1.2) AT5G23040 324 / 1e-103 CDF1 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) AT5G36880 129 / 1e-30 ACS acetyl-CoA synthetase (.1.2) AT3G51140 117 / 1e-28 Protein of unknown function (DUF3353) (.1) AT4G05160 64 / 5e-10 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 58 / 3e-08 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21240 49 / 1e-05 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT2G47240 45 / 0.0004 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G16910 44 / 0.0004 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038966 [exp] 1367 / 0 AT5G23050 1043 / 0.0 acyl-activating enzyme 17 (.1) Lus10012931 [exp] 676 / 0 AT1G55320 1008 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10034997 [exp] 668 / 0 AT1G55320 1003 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10038965 [exp] 439 / 1e-147 AT5G23040 361 / 3e-127 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10000868 [exp] 355 / 2e-115 AT5G23040 359 / 3e-126 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10009608 [exp] 323 / 4e-104 AT5G23040 333 / 3e-117 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Lus10041499 [exp] 149 / 1e-36 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10012595 [exp] 148 / 2e-36 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10041816 [exp] 122 / 6e-30 AT3G51140 328 / 3e-112 Protein of unknown function (DUF3353) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056000 [exp] 1134 / 0 AT5G23050 1054 / 0.0 acyl-activating enzyme 17 (.1) Potri.001G006700 [exp] 661 / 0 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.001G006600 [exp] 651 / 0 AT1G55320 1041 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.012G057700 [exp] 326 / 3e-104 AT5G23040 316 / 3e-109 CELL GROWTH DEFECT FACTOR 1, Protein of unknown function (DUF3353) (.1) Potri.014G140900 [exp] 149 / 6e-37 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.007G015600 [exp] 128 / 1e-32 AT3G51140 331 / 1e-114 Protein of unknown function (DUF3353) (.1) Potri.017G112800 [exp] 63 / 9e-10 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G144700 [exp] 59 / 1e-08 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 58 / 2e-08 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G177300 [exp] 49 / 8e-06 AT2G20920 306 / 2e-104 Protein of unknown function (DUF3353) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme CL0378 [flax] [poplar] PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10027257 pacid=23145548 polypeptide=Lus10027257 locus=Lus10027257.g ID=Lus10027257.BGIv1.0 annot-version=v1.0 ATGGGTTACAAATCACTGGATTCCATCTCCGTTTCCGATATCCAAGCTCTGGGAATCGAACTGCCGCTATCCGAAAAACTCCACGCCGACCTGGCCGTAA TCCTCCGTAGTCATGTTGCCGGCGACGACGCGACGACGTGGACTGACATCTGCGGTAGACTGCTCGATCCTAGCCTTCCTTTCTCCTTCCACCAGATGAT GTACTACGGCTGCTTCCTCGACTTTGGACCTGACCTGCCCGCTTGGTCCCCCGACCCGGAAAATGCAATCATGACTAATGTGGGTCAGCTCTTAGAGAGA CGAGGGGAGGAGTTTCTGGAATCAAAGTACAAGGATCCCGTTTCAAGTTTTGCTGACTTTCAGGAGTTCTCAGTCTCAAACCCGGAAGTTTACTGGAAGA CTGTGTTTGATGAAATGGAAATTATGTTCTCAGTTCCTCCGGAATGTATTCTACGTGAGGATTCGTCTCATGAGAGCCCCACGGTAAACCCCGGCGGTGA ATGGCTTCCTGGAGCGAATCTCAATCCTGCGAAAAGTTGTCTGAGTTGCAATCGGAAGAGAACTTTGGATGATGTAGTGTTGCGATGGCGTGATGAAGGA AATGATGATATCCCTGTGTGTAGCATGACACTTGAGGAGTTGCGTCAAGAAGTCTGGTTAGTTGCGCATGCACTTGATGAGCTGGGTTTAGAGAAGGGAT CTGCCATTGCTATTGACATGCCAATGAACGTCAAGTCTGTGGTTGTGTACTTGGCTATTGTTTTGGCAGGATATGTAGTTGTCTCCATTGCTGATAGCTT TGCATCCACAGAAATATCAACCAGACTTAAAATTTCTCAAGCAAAAGCCATATTTACACAGGACCTTATTATTCGCGGTGACAAAAGCATTCCCTTATAC AGTAGAGTTGTGGATGCACAGGCACCCATGGCTATCGTTATTCCTGCTACCAAAGGCTCGAGCTTCAGTATGAATTTGCGTGATGGTGATGTTTCTTGGC ATTATTTTCTGGAAAAGGTGAAAGATCTCAGTGGAAATGAATATACTGCTGTTGAACAACCAGTTGGTGCATTTACAAATATTCTTTTTTCATCTGGCAC AACAGGTGAGCCGAAGGCAATTCCATGGACCCAAGCAACTCCTCTGAAATCTGCTGCAGATGCATGGTGCCACATGGATATCCGCAAAGGAGACGTCGTT GCTTGGCCCACTAACCTTGGGTGGATGATGGGTCCCTGGCTAGTGTACGCTTCTTTGCTGAATGGAGCTTCGATTGCTCTTTATAATGGATCGCCACTAG GTTCTTCGTTTGCCAAATTTATACAGGATGCTAGAGTAACAATGCTAGGGGTTATCCCCAGTATCGTTAGGGTATGGAAAAATTTGAACGTTACAGCTGG TTATGATTGGTCTTCTATCCGCTGCTTTGGCTCGACTGGTGAAGCTTCGAGTGTTGACGAATACTTATGGTTGATGGGAAGAGCAAACTACAAGCCCGTC ATGGAATATTGCGGTGGCACAGAGATTGGTGGTGGTTTCGTTACAGGATCCATGTTGCAGCCACAGTCACTGGCTGGTTTCAGCACTCCAGCCATGGGCT GCAAATTATACATTCTGGATGACAACGGACTCCCTATACCACAGGATGCAGCTGGAATCGGCGAGCTAGCTCTCGGTTCTCTCATGTTTGGAGCTTCGAG CACGCTGTTGAACGCTGACCATTATAGTGTGTATTTCAAGGGAATGCCTTTGTGCGATGGAAAGATCCTCCGGAGACACGGTGATTTTTTCGAGCGCACA TCACGAGGATACTACCGTGCTCATGGTCGTGCAGACGATACAATGAATCTCGGAGGTATCAAGGTTAGCTCAGTGGAAATCGAGCGCATTTGTAATGGAG CAAACAACCGTGTGCTAGAGACAGCTGCAATCGGGGTGCCACCTCTAGAAGGCGGTCCAGAACGATTGACCATTGCCGTTGTACTCAACAACCCGGATGA TCCATTAGACTTAGATCAGCTGAAGAAGTCCTTCAATCTGGCAGTTCAGAAGAACCTCAACCCGTTGTTCCGGGTTCATCAGGCAGTCCCAGTTGCTTCC CTCCCGAGGACTGCAACCAACAAGGTTATGAGAAGGGTTCTACGGCAGCAGTTCACTGCTCAACAGGACCGGAACCCTAAATTCGGTAAACGTCTACAGC AGAAGCAGACGGCGAGTCTGTCTTACAATCCGCTTCAGAAGTCTTCCAGAAGCCGTACGTTCGTCAAATGCTCGTACGACATTCCTTACGAAACTTACGA AGGCAACGTACCTACGTTCAACCGGACGAGTGTTTGGGATCCGTACAAGCGGTTAGGAGTGAGTCGAGATGCTTCAGAGGACGAGGTTTGGAGCGCTCGT AATTTTCTGTTGGAGCAGTATGCGGGTCACGAGAGGAGTGAAGAGTCTGTGGAAGGTGCTTTTGAGAAGCTTCTGATGACAAGCTTTAAGCAACGTAAGA AAACCAAGATTAATTTGAAGACCAAGTTGAAGAAGCAGGTGGACGAGTCTCCAGCTTGGGTGAAGAGCTTGGTCAGCTTTGTGGAAATCCCTCCTATGGA TATCATCTTCAGGAGGAAGAAGCAGGTTGATGAGTCGCCCGCTTGGGTGAAGAACTTGCTCGGGTTGGTGGAAATGCCTCCCATGGACATCATTTTCAGG AGGCTGTTCCTTTTCGCGTTCATGGGCGGCTGGAGCATCATGAATTCTGCAGATGGTGGACCGGCTTTTCAGGTTGCAGTATCATTGGCAGCGTGCGTAT ATTTCCTCAACGAGAAGACAAAGAGCCTGGGCAGAGCTTTTGCCATCGGCCTTGGAGCTCTGGCAACCGGTTGGATATGCGGCGCCATAACGGTCCCGAT GATCCCCGCAGTTCTGATACACCCTAGTTGGACGCTGGAGCTCATGACCTCGTTGGTAGCTTACTGTTTCCTCTTCCTTGGCTGTACTTTCCTCAAATGA
AA sequence Show only first row Show all	>Lus10027257 pacid=23145548 polypeptide=Lus10027257 locus=Lus10027257.g ID=Lus10027257.BGIv1.0 annot-version=v1.0 MGYKSLDSISVSDIQALGIELPLSEKLHADLAVILRSHVAGDDATTWTDICGRLLDPSLPFSFHQMMYYGCFLDFGPDLPAWSPDPENAIMTNVGQLLER RGEEFLESKYKDPVSSFADFQEFSVSNPEVYWKTVFDEMEIMFSVPPECILREDSSHESPTVNPGGEWLPGANLNPAKSCLSCNRKRTLDDVVLRWRDEG NDDIPVCSMTLEELRQEVWLVAHALDELGLEKGSAIAIDMPMNVKSVVVYLAIVLAGYVVVSIADSFASTEISTRLKISQAKAIFTQDLIIRGDKSIPLY SRVVDAQAPMAIVIPATKGSSFSMNLRDGDVSWHYFLEKVKDLSGNEYTAVEQPVGAFTNILFSSGTTGEPKAIPWTQATPLKSAADAWCHMDIRKGDVV AWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSSFAKFIQDARVTMLGVIPSIVRVWKNLNVTAGYDWSSIRCFGSTGEASSVDEYLWLMGRANYKPV MEYCGGTEIGGGFVTGSMLQPQSLAGFSTPAMGCKLYILDDNGLPIPQDAAGIGELALGSLMFGASSTLLNADHYSVYFKGMPLCDGKILRRHGDFFERT SRGYYRAHGRADDTMNLGGIKVSSVEIERICNGANNRVLETAAIGVPPLEGGPERLTIAVVLNNPDDPLDLDQLKKSFNLAVQKNLNPLFRVHQAVPVAS LPRTATNKVMRRVLRQQFTAQQDRNPKFGKRLQQKQTASLSYNPLQKSSRSRTFVKCSYDIPYETYEGNVPTFNRTSVWDPYKRLGVSRDASEDEVWSAR NFLLEQYAGHERSEESVEGAFEKLLMTSFKQRKKTKINLKTKLKKQVDESPAWVKSLVSFVEIPPMDIIFRRKKQVDESPAWVKNLLGLVEMPPMDIIFR RLFLFAFMGGWSIMNSADGGPAFQVAVSLAACVYFLNEKTKSLGRAFAIGLGALATGWICGAITVPMIPAVLIHPSWTLELMTSLVAYCFLFLGCTFLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	1.0	0.8802
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10029834 [exp]	1.7	0.8121
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	2.0	0.7986
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Lus10038717 [exp]	2.6	0.7868
AT2G20495			unknown protein		Lus10022916 [exp]	4.9	0.7868
AT4G38495			unknown protein		Lus10004196 [exp]	4.9	0.7496
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	5.9	0.7938
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10013243 [exp]	6.0	0.7670
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	9.3	0.8127
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10032531 [exp]	11.2	0.7172

Compare expression of checked genes

Lus10027257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.