Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02930 71 / 1e-13 F-box/RNI-like superfamily protein (.1) AT5G38570 69 / 3e-13 F-box/RNI-like superfamily protein (.1) AT4G10400 65 / 1e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G18150 64 / 2e-11 RNI-like superfamily protein (.1) AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) AT5G60610 63 / 4e-11 F-box/RNI-like superfamily protein (.1) AT4G13985 63 / 4e-11 FBD1 FBD-associated F-box protein (.1) AT5G44940 63 / 4e-11 F-box/RNI-like superfamily protein (.1) AT5G56420 63 / 5e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G78760 63 / 6e-11 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038967 [exp] 452 / 1e-157 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10006513 [exp] 273 / 2e-90 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10027244 [exp] 237 / 7e-76 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10038935 [exp] 190 / 2e-58 AT1G60400 64 / 3e-11 F-box/RNI-like superfamily protein (.1) Lus10035564 [exp] 184 / 2e-56 AT3G58900 79 / 1e-16 F-box/RNI-like superfamily protein (.1.2.3.4) Lus10024702 [exp] 178 / 9e-54 AT5G02930 70 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10029433 [exp] 176 / 1e-52 AT3G18150 79 / 8e-16 RNI-like superfamily protein (.1) Lus10040452 [exp] 175 / 2e-52 AT5G02930 59 / 3e-09 F-box/RNI-like superfamily protein (.1) Lus10014161 [exp] 170 / 6e-50 AT5G53840 64 / 4e-11 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 105 / 5e-26 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 92 / 8e-21 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 90 / 3e-20 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G337200 [exp] 83 / 6e-18 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104100 [exp] 81 / 5e-17 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 77 / 5e-16 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G024300 [exp] 62 / 7e-11 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G322900 [exp] 57 / 6e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 55 / 3e-08 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121500 [exp] 55 / 3e-08 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10027258 pacid=23145456 polypeptide=Lus10027258 locus=Lus10027258.g ID=Lus10027258.BGIv1.0 annot-version=v1.0 ATGGTGAGAAGAAGCAAGAGCATTCATAATCGAATTGATAGACTGAGCAGTCTTCCTGACTGTATTTTGCATCGCATCCTCTCCTTTGTCGACACTAAAT CTTCGGTTAAAACCAGTGTTTTGTCTAGGAGGTGGATATCTGTATGGAAATATGTTCCCGCTCTCAATTTCAATTGGAGTAGGTTCAGGTCTCAACCGGG TTTCGAGCGTTTTGCGGAACAAGTTCTATCACTTCGTTCTGACCGTAGTAGCATCACAAGGGTTACAGTGCACATCTGGGTAAAACGGAGGAACGATCTG TCGGATAGGATCATGAGATACGCTGCTTCACATGGCGTTCGAGAGCTATACATTTCTACTCGTCTCATATCGCCGGGTGTTTTTGGATCAGTATGCTGGT GTTATGAATCTCTGAAAGTTTTGGAGTTGGAAGGAACAATCATGGGAAAGACTGATGTTGGGTTGTTTTCTCGTTTGCAACTGCTTGAAACTCTTACTCT GTCCCGATGCTCCTTTAACTTTGGTGATGATGATGATTTTACTAACTTCCCCAGATTGGAAACCCTGAAGCTACTCCACTGCTCTACTTTAGGGGATTAT ATTATGATAGTAACTGCCCCCAAACTGCTTAGCTTGGAGATCGTTTTGCCGGAATACGGGATTTTTCGAATCAATGCTCCGAAACTCGAGTCTTTCGGCC TTGAGATTAGTTCCACATATTTTACATTAGCAGAACTCAACCGTCTTCGAATCCATACTCCCAAGCTCCAATCTCTCAATCTCGAGACATATTGTACACT AACAGTATTGTCCAAGTCAAATCTTCCTTCCCTTAGCCGTGCAAACATCATGGTATTTGGTTGCAATGATGCCAAGAATTTTAACTAA
AA sequence Show only first row Show all	>Lus10027258 pacid=23145456 polypeptide=Lus10027258 locus=Lus10027258.g ID=Lus10027258.BGIv1.0 annot-version=v1.0 MVRRSKSIHNRIDRLSSLPDCILHRILSFVDTKSSVKTSVLSRRWISVWKYVPALNFNWSRFRSQPGFERFAEQVLSLRSDRSSITRVTVHIWVKRRNDL SDRIMRYAASHGVRELYISTRLISPGVFGSVCWCYESLKVLELEGTIMGKTDVGLFSRLQLLETLTLSRCSFNFGDDDDFTNFPRLETLKLLHCSTLGDY IMIVTAPKLLSLEIVLPEYGIFRINAPKLESFGLEISSTYFTLAELNRLRIHTPKLQSLNLETYCTLTVLSKSNLPSLSRANIMVFGCNDAKNFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03220			Protein with RNI-like/FBD-like...		Lus10027258 [exp]	0	1
AT1G04560			AWPM-19-like family protein (....		Lus10017578 [exp]	1.0	0.8466
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035234 [exp]	1.4	0.7926
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10041082 [exp]	3.0	0.7540
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	10.6	0.7205
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	11.8	0.7205
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	13.0	0.7027
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	13.0	0.7205
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	14.0	0.7205
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10026128 [exp]	14.1	0.7157
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	15.0	0.7205

Compare expression of checked genes

Lus10027258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.