Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04040 1104 / 0 SDP1 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) AT3G57140 1019 / 0 SDP1-LIKE sugar-dependent 1-like (.1.2) AT5G50375 340 / 1e-109 CPI1 cyclopropyl isomerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038968 [exp] 1443 / 0 AT5G04040 1224 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) Lus10038969 [exp] 444 / 4e-149 AT5G50375 471 / 2e-169 cyclopropyl isomerase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043800 [exp] 1158 / 0 AT5G04040 1205 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) Potri.016G041000 [exp] 1144 / 0 AT5G04040 1176 / 0.0 SUGAR-DEPENDENT1, Patatin-like phospholipase family protein (.1) Potri.015G093500 [exp] 337 / 5e-108 AT5G50375 449 / 4e-161 cyclopropyl isomerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase CL0323 [flax] [poplar] PF11815 [flax] [poplar] DUF3336 Domain of unknown function (DUF3336)
Representative CDS sequence Show only first row Show all	>Lus10027259 pacid=23145528 polypeptide=Lus10027259 locus=Lus10027259.g ID=Lus10027259.BGIv1.0 annot-version=v1.0 ATGGATATAAGTAATGAGGCCACGGTTGATCTTTTCCCAATTGGACCGTCGTCCATCCTTGGGAGGACCATTGCTTTGAAGGTCTTATTCTGCAAGTCAA TGGGCAGCTTGAGGCATCAAATTTTTCAGCTGCTGTTGAAATACATCTATAGATTTAAGGCGTTTCTGGGACCTATGTTGTCTTGGTTACATCCTAGGAA CCCACAGTGGATATTGGCTATGGTGACAGTGATAGCCTTTCTGTTGAAACGGCACACGAGTCTTAAAACCAAGGCCGAGATGGCTTACCGGCGGAAATTC TGGAGGAATATGATGAGAGCTGCTTTGACATATGAGGAGTGGGCTCATGCTGCTAAGATGCTTGATAAAGAGACCCCGAAACTCAATGAGTCCGACTTTT ATGACGAAGAGTTAGTTAGGAACAAGCTTCAAGAGCTGCACCACCGGCGTCAGGAAGGATCGCTCAGGGATATCATGTTCTTCATGAGAGCTGATCTCAT ACGGAACCTTGGCAACATGTGTAATCCAGAGCTTCACAAGGGCAGACTTCACGTTCCGAGGCTGATAAAGGATTATATTGACGAGGTATCAACTCAGTTG AGAATGGTCTGTGACTCGGATTCGGAAGAGCTTTCTCTCGAGGAAAAGCTATCTTTTATGCATGAAACTAGGCATGCCTTTGGAAGGACAGCTTTGCTTT TGAGTGGGGGTGCTTCCCTTGGAGCCTTTCATGGAGGTGTTGTAAAAACCCTGGTTGAACATAAGCTCTTACCGAGGATAATTGCTGGTTCTAGCGTGGG ATCCATTATGTGTTCAGTGGTGGCCACTAGGTCCTGGCCAGAGTTGCAAAGCTTTTTCGAGGATTCTTTGCAGTCTTTACAGTTTTTTGACCAGTTGGGT GGGATTTTTTCGATCGTGAAGAGAGTCATGATCCAGGGTGCTGTTCATGATATCCGGCAGTTGCAATGGATGTTAAGGAATCTAACGAGCAACTTAACAT TTCAAGAAGCATTTGATATGACTGGTCGAATTCTTGGGATTACAGTTTGCTCCCCTAGGAAGCATGAACCGCCAAGATGCCTCAACTACCTAACCTCCCC TCATGTTGTCATATGGAGCGCTGTGACCGCTTCTTGTGCTTTTCCTGGCCTTTTCGAGGCTCAGGAATTGATGGCAAAGGACAGGAGTGGAGAAATAGTT CCTTATCATCCACCATTTAATCTCGCTCCAGAGGAGGGGTCAGGTACGTCTACACGTCGATGGAGGGATGGTAGCTTGGAGATTGATTTACCAATGATGC AGTTGAAGGAACTATTCAATGTTAATCATTTTATTGTGAGCCAGGCAAACCCTCACATTGCACCATTACTGAGAATGAAGGAAATAATAAGGTCTTACGG AGGCAACTTTGCAGCTAAGCTTGCTCATCTTACTGAGATGGAGGTGAAACACAGATGCAATCAGGTACTAGAACTTGGCTTTCGCTTGGGGGGTCTTGCC AAGCTCTTTGCTCAAGATTGGGAGGGTGATGTCACTGTCGTAATGCCGGCAACACTTGCTCAGTACTCGAAAATCATACAAAATCCAACTCACGTGGAGC TTCAGAAGGCAGTGAACCAAGGGAGAAGAGGCACATGGGAGAAGCTTTCAGCGATGAAAGCCAACTGCGGTATCGAGCTTGCTCTTGACGAGTGTGTTGC TATTCTTAACCATATGCGTCGGCTCAAAAGGAGTGCTGAGAGAGCCGCTGCTGCCTCTCACGGTCTGCCCAACCCGGTCAAATTCAACGCTTCGAGAAGG ATTCCTTCTTGGAACTGCATTGCCCGGGAGAACTCCACAGGGTCGCTCGAGGACTTCCTTGTCGATGTTGCTTCCTCATTTCAACACTCTCCAGGCGCTG CCGGAAGAAATGCACGATTAAGTCATCGAAACGTTCACGACGGAAGCGACAGCGAATCCGAGAGCAACAACGACGTACATTCCTGGACGAGATCCGGAGG ACCGCTGATGAGGACTTCTTCCGCCAACTTGTTCGTCGACTTTGTTCAAAACCTAGATGTGGATTCTGAAATCACCAGAGGGGGCTTGATGGCTTACCCC AACTCCCCCGGGGCGCAGGTCTCGGTCAGGGAGAGCTCCCCCAGGGTGACATCTCCGGGCAGAAACTCGGAGAGCGAAATGGATCATCACAGGGACTTGA GCGGTCAGAAACCGGCCACCGCCGATTCCCCCGGTTCTACCAGCTTATGGCTCCCTTCCAACAGCAGCAAGAGATGGGCTGAGCTTTTCTTTCTCCTGTA CACTCCTTTCTGGCTTACTTTCTGTCTCGGCGTTATCGTTCCTTTCAAGCTCTACGAGGCTGATAGAAGTTTGCCTTTCACGGAACGTTATTGGGTCAAG GCAAGTGAATTCCTTTCACAGTTGCTACATCGTAGTCTCTTACAAAACAAAGTTCCACACACCACTTTTCTTCTGACTCATGTTTGCTTCCTGTTCTACC ATGTTACCTCAAACATAACACTTCGCAGGCTACGGCATGCTACTGCTGACTTGCCCCGTCCCATTCGGTGGGCATTCGAGGCATCTTGGATCTTGGCTCT TTCATATTTCATAGCATACTTGGAGACCATAGCCATCGCCAATTTCCCTTACTACGACTTTGTTGACCGAGAAGCCATGTACAAAGTTGGGTGCTTGTTC TATGCTATCTACTTCATCGTTAGCTTCCCCATGTTTCTGAGGATCGACGAGAAGCCAGGCGACGTTTGGGACTTGCCAAGGGTAGCTGTTGATGCTCTCG GAGCTGCGATGCTGGTTACGATAATACTCGACTTGTGGCGACTCTTCCTTGGACCAATTGTAGCACTCCCTGAGACAAGGCAATGTCTTCAACCTGGGCT CCCATGGTTCGCTGGACATGCCAACCAGACTTAG
AA sequence Show only first row Show all	>Lus10027259 pacid=23145528 polypeptide=Lus10027259 locus=Lus10027259.g ID=Lus10027259.BGIv1.0 annot-version=v1.0 MDISNEATVDLFPIGPSSILGRTIALKVLFCKSMGSLRHQIFQLLLKYIYRFKAFLGPMLSWLHPRNPQWILAMVTVIAFLLKRHTSLKTKAEMAYRRKF WRNMMRAALTYEEWAHAAKMLDKETPKLNESDFYDEELVRNKLQELHHRRQEGSLRDIMFFMRADLIRNLGNMCNPELHKGRLHVPRLIKDYIDEVSTQL RMVCDSDSEELSLEEKLSFMHETRHAFGRTALLLSGGASLGAFHGGVVKTLVEHKLLPRIIAGSSVGSIMCSVVATRSWPELQSFFEDSLQSLQFFDQLG GIFSIVKRVMIQGAVHDIRQLQWMLRNLTSNLTFQEAFDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIV PYHPPFNLAPEEGSGTSTRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRMKEIIRSYGGNFAAKLAHLTEMEVKHRCNQVLELGFRLGGLA KLFAQDWEGDVTVVMPATLAQYSKIIQNPTHVELQKAVNQGRRGTWEKLSAMKANCGIELALDECVAILNHMRRLKRSAERAAAASHGLPNPVKFNASRR IPSWNCIARENSTGSLEDFLVDVASSFQHSPGAAGRNARLSHRNVHDGSDSESESNNDVHSWTRSGGPLMRTSSANLFVDFVQNLDVDSEITRGGLMAYP NSPGAQVSVRESSPRVTSPGRNSESEMDHHRDLSGQKPATADSPGSTSLWLPSNSSKRWAELFFLLYTPFWLTFCLGVIVPFKLYEADRSLPFTERYWVK ASEFLSQLLHRSLLQNKVPHTTFLLTHVCFLFYHVTSNITLRRLRHATADLPRPIRWAFEASWILALSYFIAYLETIAIANFPYYDFVDREAMYKVGCLF YAIYFIVSFPMFLRIDEKPGDVWDLPRVAVDALGAAMLVTIILDLWRLFLGPIVALPETRQCLQPGLPWFAGHANQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	0	1
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	2.2	0.9188
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035161 [exp]	3.0	0.8818
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	3.2	0.9042
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	4.2	0.8927
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	4.6	0.8881
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	5.7	0.8875
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10014352 [exp]	6.3	0.8516
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	6.5	0.8986
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	6.7	0.8968
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030635 [exp]	12.5	0.8742

Compare expression of checked genes

Lus10027259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.