Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10190 159 / 7e-49 Calcium-binding EF-hand family protein (.1) AT2G41410 157 / 5e-48 Calcium-binding EF-hand family protein (.1) AT1G66400 84 / 2e-20 CML23 calmodulin like 23 (.1) AT3G59440 84 / 4e-20 Calcium-binding EF-hand family protein (.1) AT1G24620 84 / 5e-20 EF hand calcium-binding protein family (.1) AT2G15680 84 / 6e-20 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT3G51920 79 / 1e-18 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT2G43290 81 / 2e-18 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT5G37770 79 / 3e-18 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT3G22930 79 / 3e-18 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038970 [exp] 311 / 7e-109 AT2G41410 166 / 7e-52 Calcium-binding EF-hand family protein (.1) Lus10014050 [exp] 87 / 4e-21 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10014708 [exp] 84 / 2e-20 AT4G14640 163 / 2e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10014709 [exp] 84 / 2e-20 AT4G14640 162 / 4e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10019863 [exp] 85 / 3e-20 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10004088 [exp] 81 / 2e-19 AT4G14640 159 / 5e-51 calmodulin-like 8, calmodulin 8 (.1) Lus10028913 [exp] 79 / 2e-18 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10024830 [exp] 79 / 2e-18 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10027701 [exp] 80 / 5e-18 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G040900 [exp] 184 / 8e-59 AT3G10190 175 / 2e-55 Calcium-binding EF-hand family protein (.1) Potri.006G043700 [exp] 183 / 2e-58 AT2G41410 176 / 2e-55 Calcium-binding EF-hand family protein (.1) Potri.005G215700 [exp] 91 / 5e-23 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.017G029700 [exp] 91 / 3e-22 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.014G070700 [exp] 90 / 5e-22 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.007G128600 [exp] 83 / 2e-19 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.006G065900 [exp] 83 / 4e-19 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.010G107100 [exp] 79 / 3e-18 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.009G102500 [exp] 79 / 3e-18 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.008G159300 [exp] 79 / 3e-18 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10027261 pacid=23145446 polypeptide=Lus10027261 locus=Lus10027261.g ID=Lus10027261.BGIv1.0 annot-version=v1.0 ATGAAGGTCTTCAAGATCATCACAAACCCTAAAAGCCTCAACCTCAGCCCCTCCCGCCTCTTCCGCTCCAAAAAATCTTCAAGATCCACCGTCTCCAGAT CCGACCCTTCCTCCTTCAGCTCCTCCACTTCCGATTCTTCCTCCTCCACCAACCTCAAGCACCCACACTCCTCCGCCACCCCCAAGAGCGTCCTCCCTCC TCAATCCTCCGGCGAATGGTTGTCCGATCTATCCGGCGACCTTCAGAGCGCCTTCCGTGTGATCGACAGGGACAACGACGGCCTGGTTTCCAAACAAGAC TTAACGGCGCTGCTGAACCGATTCGGAGCTGAGGAGGAAGTAGCTACTATGTTGAGCGAGGTCGATCTCCATGGGGACGGATGTGTGACGGTGGAGGCGC TTATGGACCAGATCGGGTCTGGATGGGAGCCGGCCGGGAGGGAGGAGCTGAAGGAGACGTTTGAGTTCTTTGATACGGACCACGACGGGAAGATCACGGC GGAGGAGCTGTTGAGTGGGTTTGTGGCCGTTGGGGAGGAGAAGTGCACGTTAGAGGAGTGCCGGCGCATGTTAGCCGAGGTAGATAAGAATGGGGATGGG TTCGTGTGCTTGGACGACTTTTGTAGAATGATGGACCTTCAGAGGTGA
AA sequence Show only first row Show all	>Lus10027261 pacid=23145446 polypeptide=Lus10027261 locus=Lus10027261.g ID=Lus10027261.BGIv1.0 annot-version=v1.0 MKVFKIITNPKSLNLSPSRLFRSKKSSRSTVSRSDPSSFSSSTSDSSSSTNLKHPHSSATPKSVLPPQSSGEWLSDLSGDLQSAFRVIDRDNDGLVSKQD LTALLNRFGAEEEVATMLSEVDLHGDGCVTVEALMDQIGSGWEPAGREELKETFEFFDTDHDGKITAEELLSGFVAVGEEKCTLEECRRMLAEVDKNGDG FVCLDDFCRMMDLQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	0	1
AT2G41410			Calcium-binding EF-hand family...		Lus10038970 [exp]	1.0	0.9467
					Lus10039442 [exp]	4.5	0.8925
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10039857 [exp]	4.9	0.8235
AT1G11300			protein serine/threonine kinas...		Lus10007600 [exp]	6.0	0.8361
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	6.7	0.8415
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	6.9	0.8409
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	7.9	0.8394
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10002309 [exp]	8.1	0.8499
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	11.1	0.8464
AT4G25030			unknown protein		Lus10041415 [exp]	14.0	0.8168

Compare expression of checked genes

Lus10027261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.