Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027262 pacid=23145546 polypeptide=Lus10027262 locus=Lus10027262.g ID=Lus10027262.BGIv1.0 annot-version=v1.0 ATGGTTTTATCAGCTATATTAGTTCAGCCTTGCTTCTCAACGTCCATGAACCAGAAATGCACGTCTGGTGCGTCTAGCAGAGGCATAACACTAAGCAGTT CTTGTCGAAGTTGTATGGAGATTCAACCAAGCGCCCTACTGTCAAGTCCTGGTTGCCCTGCCGGGTTAAACGGTGTTAATCCGCACGACAACCGTCTTGG TGGGTTTTGGACTGAAGAAAAGAAGACACTGTACAAAGTTGCAGCGAAACCGGTTGTTGGAGTTTATGAGGCCCGAGGGCATAGATTCACTTGTGACTGC GTACAGAACGAGGCAGTAGCTCATACGATACGATGA
AA sequence Show only first row Show all	>Lus10027262 pacid=23145546 polypeptide=Lus10027262 locus=Lus10027262.g ID=Lus10027262.BGIv1.0 annot-version=v1.0 MVLSAILVQPCFSTSMNQKCTSGASSRGITLSSSCRSCMEIQPSALLSSPGCPAGLNGVNPHDNRLGGFWTEEKKTLYKVAAKPVVGVYEARGHRFTCDC VQNEAVAHTIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027262 [exp]	0	1
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	11.0	0.8123
AT2G34730			myosin heavy chain-related (.1...		Lus10023264 [exp]	13.4	0.8127
AT1G67390			F-box family protein (.1)		Lus10013664 [exp]	15.9	0.8086
AT5G09225			unknown protein		Lus10033507 [exp]	18.7	0.6934
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	24.3	0.7650
AT5G10620			methyltransferases (.1)		Lus10026980 [exp]	30.5	0.7860
AT5G17070			unknown protein		Lus10008757 [exp]	32.1	0.7728
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	44.0	0.7589
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10037485 [exp]	44.7	0.7730
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	48.3	0.7578

Compare expression of checked genes

Lus10027262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.