Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04050 684 / 0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) AT1G74350 211 / 4e-58 Intron maturase, type II family protein (.1) ATMG00520 81 / 1e-15 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038971 [exp] 1476 / 0 AT5G04050 704 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10036278 [exp] 235 / 1e-73 AT5G04050 87 / 8e-21 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10021359 [exp] 250 / 2e-71 AT1G74350 838 / 0.0 Intron maturase, type II family protein (.1) Lus10017036 [exp] 93 / 2e-20 AT1G74350 200 / 1e-58 Intron maturase, type II family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043650 [exp] 1039 / 0 AT5G04050 742 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Potri.005G063750 [exp] 232 / 3e-65 AT1G74350 877 / 0.0 Intron maturase, type II family protein (.1) Potri.007G062302 [exp] 89 / 4e-18 ATMG00520 1095 / 0.0 Intron maturase, type II family protein (.1) Potri.004G132450 [exp] 56 / 7e-08 AT1G30010 988 / 0.0 Intron maturase, type II family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [flax] [poplar] RdRP PF00078 [flax] [poplar] RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) CL0359 [flax] [poplar] Intron-mat_II PF01348 [flax] [poplar] Intron_maturas2 Type II intron maturase
Representative CDS sequence Show only first row Show all	>Lus10027263 pacid=23145434 polypeptide=Lus10027263 locus=Lus10027263.g ID=Lus10027263.BGIv1.0 annot-version=v1.0 ATGCTCAGAAGAACAAAACCAATTTGGTCACAGCTCATCAAACACTCGTTCTTCTGTTCATCTCTTCCCCTTCGACACTCCGACCTGCAACAAGAAACCC CAACACAACAAAACCCCACCATCGAACCCTTGTCCCAAAACCAGCTCAAATCTCTCGTCCTCTCCCACTGCTCCTACGGCAAGTTCCACAACCTCATCCA AGACGTCGTCGCTTCACCCCCTGTCCTCCTCTCCGCCTCTCAAAACCTAATCCCCAACACCACAGCTGCCGCCGCCTCTCCAAAATGCTCTCTTTACCAA TTGGTCTCTAACGTTCTCTCCATCGAGGGCATGAGTCGCGAGATCATCGAAAACCGCCTGGATATAGAATCCCATTGCGTCAAATTTGCAGGTAAAAGTG ATTGCTTGGTCCTGCCTGATTTGAAGCTGAAAGTTTTGATTGAATCCATTAGGATGGTGCTTGAAATTGTTTACGATGATCGATTCGTTACGTTTTCATA CGGCGGTCGGGTCAACATGGGTCGACACACTGCCATTAGGTACTTGAAGAACTCTGTTGAGAATCCTAGCTGGTGGTTTAGAGTTCATTTCGAAAATCGG GAGTTTGATAGTAGAAATGTGGAGTTCTTGTGTTTGATTCTTGAAGATAAAGTTAAAGACAAGATTTTGATTAGCTTGATAAGAAGACTTTTCGATTCTG GAATGCTGAAGATTGAACTAGGCGGGTTGTATTTAGGTAGAGGCTTCCCTCAGGAATGCGGGTTGTGCTCGATTTTGATCAACGTTTACTTCAATGGATT CGATAAAGAGATTCAAGAACTAAGGCTGCAACTGAATCGGGAGAATCCTAGAACCGATATCAATAGCGATGATGATAATAAGGAAAAGCCGAGTCCTTTG TATAAGCCGGTGAAGATGTATGCAGTTAGGTACTTGGACGAGATACTAGTGGTTACACCCGGACCGAAGAAGGTGGCTATTGGTTTAAAGAGCAGATTTT TGAAGATTTTAGAGAGTGATTTCAAACTGAAGGTCAATAAAGGGAGGACGATAATTCACAGTGCAGTTTCAGAGAAGATGAACTTTATCGGATTCGGATT GCAGGCTGTGCAGCCTTCGGTGTTACACCCGCCCATGTCGGAGAAGGCGATTCGAGCAAGGAAGAAATATCTACACCAGAAGGAAGTTCGAGCTTCAGAA CTGAAAAATGCTCGAGAGAGAAACCGTAAGAAACTGGGGTTGAAAATATTGCGACATGTTGTCAAGAAGGCCAAACAGAGTAACGGATTCAAATCCGATT TCGAAATTGAAAATGAAGTTCAAGTTCAACAGATATTTGCAGTATGGACTGATGAAACAGTTAAAGAGTTTCTAAGCTCGATAGACGAGCGATGGAATTG GCACCGTTTGCTCACTAGTGGCAGTTTCCTCCATCTGAGGCATATTAGAGAAATATTGCCACAGGAGCTTGTCGAATCCTACGACAAGTTTCAAAGACAA GTACAGAAGCACTTATCACCAGTCAAGGAAAGAAGAGCAATAGAGGAAGCGGAGAAACGATCGGAAGAAGTAGAAGAAAGGAAATATGCCGAAAGAACAG TAGCCGACCTAACGAAGCTATCGATGAAAGTATCTGCACCGATCGAGTTAATTAGGGAAGCGGTTAGGATGGCAGGTTTTACAAACAACATGGGTCGTCC AAGGCCAATCAATTGGCTAACTAATCTCGAAGATGCCGATATTATCAAGTGGTATGCAGGGGTCGGAGAAAGATGGCTCGACTTCTTCTGCTGCTGCCAC AACTTTAAAATGGTGAAGACGATCGTAACTTATCACCTGAGGTTTTCTTGTTTGCTGACATTGGCAGAGAAGCACGAGGCGGCAAAACTCGAGACGATTA AACATTACACCAAGAATCTGAGAGTTTCTTTGATGGAAGGGGATGATGAGTATTACTTTCCTACAGAGAAGGAAGTGAAGATGATGGGAGATAAGAATCT TTCGGATCCGAAACCAGTGGATGGAGCTTTGTCGTTGCAGTTGATTCGATTGGCTTGTGACGATGAGCCATTAAATTCATGCACTGCTCATTTTTGTGAT AGAACAGATACGATTACCTATCGTGTGAGGTTACTGCAAAATTTGTTAGGTGCAAACCCTGCTAATGGAGATAAATGGGTCCCTGGGATGGGTGCAATAC ATGACAGTCTGCATCAGATATGCATTCCTCTTTGTCCCGATCACATTAGCGACTTATACACTGGGAAAATTAGCCTTCAAGACATTGACTGTTCTTCCTT TTTGGATGTGGACTGA
AA sequence Show only first row Show all	>Lus10027263 pacid=23145434 polypeptide=Lus10027263 locus=Lus10027263.g ID=Lus10027263.BGIv1.0 annot-version=v1.0 MLRRTKPIWSQLIKHSFFCSSLPLRHSDLQQETPTQQNPTIEPLSQNQLKSLVLSHCSYGKFHNLIQDVVASPPVLLSASQNLIPNTTAAAASPKCSLYQ LVSNVLSIEGMSREIIENRLDIESHCVKFAGKSDCLVLPDLKLKVLIESIRMVLEIVYDDRFVTFSYGGRVNMGRHTAIRYLKNSVENPSWWFRVHFENR EFDSRNVEFLCLILEDKVKDKILISLIRRLFDSGMLKIELGGLYLGRGFPQECGLCSILINVYFNGFDKEIQELRLQLNRENPRTDINSDDDNKEKPSPL YKPVKMYAVRYLDEILVVTPGPKKVAIGLKSRFLKILESDFKLKVNKGRTIIHSAVSEKMNFIGFGLQAVQPSVLHPPMSEKAIRARKKYLHQKEVRASE LKNARERNRKKLGLKILRHVVKKAKQSNGFKSDFEIENEVQVQQIFAVWTDETVKEFLSSIDERWNWHRLLTSGSFLHLRHIREILPQELVESYDKFQRQ VQKHLSPVKERRAIEEAEKRSEEVEERKYAERTVADLTKLSMKVSAPIELIREAVRMAGFTNNMGRPRPINWLTNLEDADIIKWYAGVGERWLDFFCCCH NFKMVKTIVTYHLRFSCLLTLAEKHEAAKLETIKHYTKNLRVSLMEGDDEYYFPTEKEVKMMGDKNLSDPKPVDGALSLQLIRLACDDEPLNSCTAHFCD RTDTITYRVRLLQNLLGANPANGDKWVPGMGAIHDSLHQICIPLCPDHISDLYTGKISLQDIDCSSFLDVD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04050			RNA-directed DNA polymerase (r...		Lus10027263 [exp]	0	1
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10015257 [exp]	14.1	0.7767
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10024026 [exp]	16.6	0.7706
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	21.4	0.7404
					Lus10000429 [exp]	21.9	0.7143
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	32.2	0.7540
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	36.1	0.7470
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10033903 [exp]	46.4	0.7379
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10009487 [exp]	51.2	0.7296
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10024724 [exp]	53.0	0.7015
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	54.1	0.7309

Compare expression of checked genes

Lus10027263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.