Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78130 321 / 2e-108 UNE2 unfertilized embryo sac 2, Major facilitator superfamily protein (.1) AT5G10190 312 / 6e-105 Major facilitator superfamily protein (.1) AT4G36790 173 / 3e-51 Major facilitator superfamily protein (.1) AT2G18590 124 / 1e-32 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038972 [exp] 427 / 6e-150 AT5G10190 720 / 0.0 Major facilitator superfamily protein (.1) Lus10041712 [exp] 138 / 4e-38 AT4G36790 663 / 0.0 Major facilitator superfamily protein (.1) Lus10026037 [exp] 132 / 9e-36 AT4G36790 639 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G091800 [exp] 356 / 7e-122 AT5G10190 643 / 0.0 Major facilitator superfamily protein (.1) Potri.007G091700 [exp] 331 / 4e-112 AT5G10190 660 / 0.0 Major facilitator superfamily protein (.1) Potri.007G030800 [exp] 147 / 3e-41 AT4G36790 633 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10027264 pacid=23145521 polypeptide=Lus10027264 locus=Lus10027264.g ID=Lus10027264.BGIv1.0 annot-version=v1.0 ATGGTGAATCAGGAGAAGCTGGCATTGATACTGGTGAATCTGGCGGCGGTCATGGAACGAACCGACGAATCTCTGCTCCCCGGGGTGTACAAAGAAGTCG GCGCCGCTTTGCACACCGACCCAACTGGGTTAGGCTCCTTAACTTTATACAGATCCATCGTCCAGTCGTCTTGTTACCCGCTCGCCGTTTACCTAGCTTC CCGCCATAACCGCGCCCACGTTATCGCTCTCGGTGCTTTCCTCTGGGCTGCCGCTACTTTCCTTGTCGTGGCGATTTCTAGAGGCCTCAGCGGGATCGGA CTCGCCATAGTAACACCTACAATTCTGTCTCTAGTTGCCGATTCCACCGAAGATAACAATCATGGCATGGCGTTCGGATGGTTACAACTAACAGCAACAA TCAGCTCCATCATCGGAGGCCTGTGTTCCGTACTCATCGCTTCTACAACCATCATGGGGATTCCAGGCTGGCGAGTTGCTTTCCATCTTGTTGCAGTAAT AAGCGTAGTAGTCGGTATATTGGTCCGCCTATTCGCTCACGATCCGAAGTTCTCTGAGAAAAGGCACTCCAACTCGAACTCTGCCTGTTCTTTTATGTCG GAAATGAAGGGTTTGCTAGCAGAGGCCAAATCTGTGATGAAGATACCATCTTTTCAGATAATCGTGGCTCAAGGCGTCTCCGGATCGTTTCCATGGTCGG CTTTATCTGTTGCTCCGATGTGA
AA sequence Show only first row Show all	>Lus10027264 pacid=23145521 polypeptide=Lus10027264 locus=Lus10027264.g ID=Lus10027264.BGIv1.0 annot-version=v1.0 MVNQEKLALILVNLAAVMERTDESLLPGVYKEVGAALHTDPTGLGSLTLYRSIVQSSCYPLAVYLASRHNRAHVIALGAFLWAAATFLVVAISRGLSGIG LAIVTPTILSLVADSTEDNNHGMAFGWLQLTATISSIIGGLCSVLIASTTIMGIPGWRVAFHLVAVISVVVGILVRLFAHDPKFSEKRHSNSNSACSFMS EMKGLLAEAKSVMKIPSFQIIVAQGVSGSFPWSALSVAPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10190			Major facilitator superfamily ...		Lus10027264 [exp]	0	1
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	2.4	0.8246
AT1G76270			O-fucosyltransferase family pr...		Lus10030754 [exp]	3.5	0.7546
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	5.3	0.7409
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	8.4	0.7123
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	11.2	0.7105
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10011917 [exp]	17.6	0.7598
AT1G76270			O-fucosyltransferase family pr...		Lus10013234 [exp]	17.9	0.6933
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	21.2	0.7095
AT1G25550	GARP		myb-like transcription factor ...		Lus10041485 [exp]	25.5	0.6917
AT1G75800			Pathogenesis-related thaumatin...		Lus10013560 [exp]	27.2	0.6853

Compare expression of checked genes

Lus10027264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.