Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10190 130 / 2e-36 Major facilitator superfamily protein (.1) AT1G78130 126 / 3e-35 UNE2 unfertilized embryo sac 2, Major facilitator superfamily protein (.1) AT4G36790 65 / 4e-13 Major facilitator superfamily protein (.1) AT2G18590 64 / 1e-12 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038972 [exp] 166 / 5e-50 AT5G10190 720 / 0.0 Major facilitator superfamily protein (.1) Lus10041712 [exp] 69 / 2e-14 AT4G36790 663 / 0.0 Major facilitator superfamily protein (.1) Lus10026037 [exp] 68 / 4e-14 AT4G36790 639 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G091800 [exp] 124 / 3e-34 AT5G10190 643 / 0.0 Major facilitator superfamily protein (.1) Potri.007G091700 [exp] 110 / 3e-29 AT5G10190 660 / 0.0 Major facilitator superfamily protein (.1) Potri.007G030800 [exp] 74 / 5e-16 AT4G36790 633 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027265 pacid=23145405 polypeptide=Lus10027265 locus=Lus10027265.g ID=Lus10027265.BGIv1.0 annot-version=v1.0 ATGACGCTGTTCACTGTCGCGATCTCCATTGGCGGTCTGTTCGGAGGGAAAATGGGAGACACTCTTGCTAAACGGTTCCCGAATTCCGGAAGGATCGTTC TTTCTCAAATAAGCTCCGGTTCGGCCATTCCTTTAGCTGCTTTTCTGCTGCTGGTACTGCCTGATGATCCCTCGACAGGTTTCATGCACGGTCTGGTCTT GTTCATCATGGGGCTGTCAATTTCGTGGAACAGTCCCGCCATAAACAACGATGATGATGATGAAGACGGTAAAATTGTGGAAGAAGATGGACGGGCCGTC GTTGAGATTGAGTACGGGAAAGATGAAGAGAGTGTTGGGTTGGATGATGGTGATGATAAGGCTTTGCTTTCTGGTGATCAGCTTTCTGAGTTGGATCATA GATGA
AA sequence Show only first row Show all	>Lus10027265 pacid=23145405 polypeptide=Lus10027265 locus=Lus10027265.g ID=Lus10027265.BGIv1.0 annot-version=v1.0 MTLFTVAISIGGLFGGKMGDTLAKRFPNSGRIVLSQISSGSAIPLAAFLLLVLPDDPSTGFMHGLVLFIMGLSISWNSPAINNDDDDEDGKIVEEDGRAV VEIEYGKDEESVGLDDGDDKALLSGDQLSELDHR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	3.0	0.8000
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	5.8	0.7932
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010676 [exp]	9.2	0.7654
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028368 [exp]	9.5	0.7322
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	11.0	0.7744
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	11.1	0.7771
AT4G03420			Protein of unknown function (D...		Lus10031632 [exp]	14.7	0.6924
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	16.0	0.7553
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	16.4	0.7497
AT5G39590			TLD-domain containing nucleola...		Lus10012406 [exp]	19.4	0.7276

Compare expression of checked genes

Lus10027265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.