Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04060 887 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G10200 874 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 485 / 9e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 481 / 3e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 479 / 1e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G14430 466 / 3e-158 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G39750 442 / 5e-148 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 442 / 6e-148 Putative methyltransferase family protein (.1) AT1G77260 422 / 8e-141 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 397 / 6e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038973 [exp] 1149 / 0 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022291 [exp] 496 / 4e-170 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10003656 [exp] 495 / 8e-170 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10011815 [exp] 472 / 2e-160 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10004702 [exp] 436 / 8e-146 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 432 / 3e-144 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 431 / 1e-143 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 427 / 8e-143 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021177 [exp] 407 / 1e-135 AT1G04430 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043600 [exp] 964 / 0 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G342300 [exp] 487 / 2e-166 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G036800 [exp] 466 / 4e-158 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 463 / 4e-157 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 445 / 2e-149 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 436 / 1e-145 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 425 / 1e-141 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 402 / 2e-133 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 402 / 3e-133 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075300 [exp] 401 / 3e-133 AT4G00740 965 / 0.0 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10027266 pacid=23145502 polypeptide=Lus10027266 locus=Lus10027266.g ID=Lus10027266.BGIv1.0 annot-version=v1.0 ATGGCGGCATCTTTTTACTTCGGCACCCTTTTCGGCAACAACAATGCACCCATCTACGTCGGTCGTCTCTCCTCCAATTCCTCCTCTCTCTCTGTCCCTG GTAGCTCCACGTTCACTAATAGAGTTGCTATTGCTTACCGAGAAACGCCATTGAAGATCCCGGAAACTGGGATGAATGTGTGCCCATTGAAGTTCAATGA GTATATACCTTGCCATGACATTGCTTATGTTCACACTTTGCTTCCAAGCTTGAATCTCTCCAGAAGAGAAGAGCTGGAGCGTCATTGTCCTCCACCCGAG AAGCGCTTATTTTGCTTAGTACCGCCACCTGAAGACTATAGATTGCCTATAAAATGGCCGACCAGCCGAGATTATGTTTGGCGAAGCAATGTCAATCATA CACATCTTGCAGAGGTGAAAGGTGGGCAGAATTGGGTTCATGAGAAGGATCAGTTGTGGTGGTTCCCCGGTGGTGGGACTCATTTCAAGCACGGTGCACC GGAGTATATTCAGAGGTTAGGAAATATGACAACTGATGAAACAGGTGATCTGCGATCAGCTGGAGTGTTTCAGGTGCTGGATGTTGGCTGTGGTGTTGCA AGCTTCTCGGCTTATCTGCTTGCACTGGATATTCAGACAATGTCATTCGCACCCAAAGATGGTCATGAAAACCAGATTCAATTCGCTCTCGAGCGAGGAA TTGGTGCCATGATATCAGCCATAGCCACAAAGCAAATGCCATATCCATCTAATTCTTTTGAGATGGTTCATTGTTCGAGATGTCGTGTTGATTGGCATGA GAATGATGGAATTTTACTCAAAGAAGTTAACCGAATTATGCGCTATAATGGATACTTCATCTATTCAGCTCCACCTGCATACAGAAAGGATAAAGATTAT CCAATGATATGGGATAAGTTAATGAATCTGACTTCAGCAATGTGCTGGAAGCTCATATCTCGAAAAGTTCAGACTGCTGTGTGGATTAAGAAGGAAGATG ATGCTTGCATCCTAAAAAATGCAGAGATGAAACTTATTGATATTTGTGACTCGGTTGATAATCTGAAATCTTCATGGAACATACCATTAAGAAGCTGCAT ATCGACGAGTGCAGATACAGCTTCCCAGCAGCTACCTCCTAGACCTCAGCGTTTGTCAGTATATTCACAGAGTCTTAGAAGTCTAGGAATTAGTGCTGCA GAATTCACGGAAGATTCGCAATTCTGGCAAGATCAAGTTCGTAATTATTGGAAACTGATGAACGTGAAGGGGACTGAGGTAAGAAACATCATGGATATGA ATGCACATCTGGGAGGATTCTCCGTCGCTTTAAGCAAAAGACCGGTCTGGGTGATGAATGTGGTCCCTATGACGATGAATAATACCCTGTCAGCAATTTA CGACCGGGGCCAATTAGGCGTCTTTCACGACTGGTGTGAGCCATTTTCGACGTATCCACGTACGTACCATTTACTGCATGCCACCCGTCTATTTAGCCAC TATAAAAACCACGGAGAAGCTTGTAGAGTAGAAGATATCGTCCTGGAGATGGATCGTATGTTACGTCCTCAGGGATTTGTCATTATTAGAGACGAAGAAC CGGTTATATCGAGAATACGCGATCTGGCACCGAAGTTTTTGTGGGAAGTGGAATCACAGACTCTAGAGAACAAGGAGATGAAGATGGAGAGTGTGCTATT CTGCAGGAAGAAGTTTTGGTCGATTGTTTAA
AA sequence Show only first row Show all	>Lus10027266 pacid=23145502 polypeptide=Lus10027266 locus=Lus10027266.g ID=Lus10027266.BGIv1.0 annot-version=v1.0 MAASFYFGTLFGNNNAPIYVGRLSSNSSSLSVPGSSTFTNRVAIAYRETPLKIPETGMNVCPLKFNEYIPCHDIAYVHTLLPSLNLSRREELERHCPPPE KRLFCLVPPPEDYRLPIKWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEKDQLWWFPGGGTHFKHGAPEYIQRLGNMTTDETGDLRSAGVFQVLDVGCGVA SFSAYLLALDIQTMSFAPKDGHENQIQFALERGIGAMISAIATKQMPYPSNSFEMVHCSRCRVDWHENDGILLKEVNRIMRYNGYFIYSAPPAYRKDKDY PMIWDKLMNLTSAMCWKLISRKVQTAVWIKKEDDACILKNAEMKLIDICDSVDNLKSSWNIPLRSCISTSADTASQQLPPRPQRLSVYSQSLRSLGISAA EFTEDSQFWQDQVRNYWKLMNVKGTEVRNIMDMNAHLGGFSVALSKRPVWVMNVVPMTMNNTLSAIYDRGQLGVFHDWCEPFSTYPRTYHLLHATRLFSH YKNHGEACRVEDIVLEMDRMLRPQGFVIIRDEEPVISRIRDLAPKFLWEVESQTLENKEMKMESVLFCRKKFWSIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	0	1
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	1.4	0.9581
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	2.0	0.9449
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10038146 [exp]	2.4	0.9398
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10003235 [exp]	2.4	0.9306
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	4.0	0.9338
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	4.5	0.9308
AT5G38880			unknown protein		Lus10005085 [exp]	4.7	0.9051
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	6.7	0.8995
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031722 [exp]	6.7	0.8718
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10033356 [exp]	8.0	0.8961

Compare expression of checked genes

Lus10027266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.