Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74580 801 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 326 / 3e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 296 / 1e-89 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 285 / 1e-86 RPF2 rna processing factor 2 (.1) AT1G62910 282 / 1e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 275 / 5e-83 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 275 / 6e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48810 275 / 2e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 273 / 4e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 269 / 2e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038974 [exp] 1197 / 0 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 321 / 1e-98 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 288 / 2e-86 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 270 / 2e-81 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10036020 [exp] 275 / 6e-81 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 268 / 4e-80 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 267 / 1e-79 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036238 [exp] 266 / 3e-79 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 259 / 3e-75 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234500 [exp] 913 / 0 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 299 / 2e-92 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 296 / 5e-91 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 293 / 1e-89 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 295 / 2e-89 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 290 / 1e-88 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 285 / 3e-86 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 282 / 9e-86 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 281 / 2e-85 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 282 / 4e-85 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027267 pacid=23145374 polypeptide=Lus10027267 locus=Lus10027267.g ID=Lus10027267.BGIv1.0 annot-version=v1.0 ATGTGTTCTACGTTGCTTCCAAAACATGTGGCTTCTTTCATAAAGTACAAAACGGACCTTCTGAAAGCACTTGAAACTTTCAATTCCGTGAAAGGAGAAG ATGGATTTAAGCACACATTGTGGACTTATAAGTGTATGATTGAGAAACTAGGGAGCCACGGGCTATTCGAGGCAATGGAACAAGTGCTAATGGAGACGAG GATGAATGTTGATAACAATTTGCTGGAAGGAGGGTACGTAGGAGCTATGAGGAATTTTGGCAAGAAAGGGAGAGTTCAGGAAGCCGTCGATGTTTTCGAG AGGATGGACTTCTATAACTGTGGGCCGTCGGTTTTATCTTATAATGCCATCATGAGCATATTGGTTGAGTATGGGCATTACACTCAAGTGCATAAAGTTT ACTTGCGAATGAGGGATAAAGGAATCCCTCCAGATATCTATACTTTCACGATTTGGATAAAGTCCTTCTGCAAGACTGAAAGGCCTCATGCTGCTCTAAG GCTTTTGAACAACATGTCTTCTCAAGGGTGTGAAGTTAATGCAGTTGCGTATTGTACCGTCATTGGTGGATTTTACGATCGGAATTGTCCTCTTGATGGG TACGATCTCTTCAATAGGATGCTTGCTTTGGATATATTCCCAGAAAATGTTACGTTTAACAAACTTGTGCATGCCCTTTGGCTTTGTAGAGCAGGTGCAC TACACAGAGCTGTCAATATGTTGGATGGCATGAACAAAGAAGTCCTAGTTCCTGATGTTGTAACCTACAACACTTTAATTTCCGGTTTGTGTAAGAGCAA TAAGGTCGCTGAAGCCGAGAGCTACTTGCATAAGATGGTGAATGCAGGACTAGATCCTGTTGCCTTTACTTACAACACTATCATTCATGGATATTGCAAA CTTGATCGGGCATTTTCTCTTTTCCGCAAGGCTACGGGGAAAGGAGGCTTGAAGCGTAAGGTTATTCTCTATAATACACTAGTTAAAGGATTGTGTCAAC AAGGACATATTCTTCAAGCCTTGGATTTGATGGGTGAGATGTCGGAGAAAGATTGCAATCCCGATACGTGGGCTTACAATCTACTCATAGATGGATTGTG TAAGATGGGGTGCGTCTCTGATGCCGATAATCTCATGAACGATGCTATTGCGAAAGGCTGTATTCCGGATATTTTTACGTTCAATACATTACTCGACGGG TTCTGCAAACAGTTGAGAATGGAGAATGCTATTGAGCTTCTACATAGCATGGGGAATCATGATATCTCGCCCGATGTTATCACGTATAATACTCTATTGA ACGGTCTATGCAAGTCTGGAAAATCCGAAGATGTCATGGAAACGTTCAAGATGATGTTGGAGAGAGGATGTGTTCCTAATTTAATCACCTACAGTATACT GATAGAGAGCCTCTGCAAATCTAGGAAAGTGAACAAGGCTATGGAGTTACTCGAGGAAATCAGGGGGGAAGGTCTGGTTCCGGACACTGTCAGCTATGGA ACTGTCATCAACGGTCTCTGCAACATCGGTGATTTGGATAGAGCATACGATCTTTTCGAAAGAATGAATCGAGAATACAACATCATTCACACGACATCCA CGTTCAATATTATGATCAATGGTTTTGCCGAGAAGCTGAATGTTGAAATGGCGGAAAAGCTTTTCTATCGGATGTGCAGTCCGGATGACTATACGTACCG TGTGATGATTGATGGTTTCTGCAAGGTATGGAAGATCGACTCTGCGTATAAGTTTCTTGTGGAGATGATAAAGCATCGGTTTGTTCCATCGTTAATGACG TTTGGAAGAGTGGTCAACTGTCTGTGTGTGCAAGATCGAGTTAACGATGCTGTTAGAATAGTCCATTTAATGGTGAGAAATGGATTTGTGCCGGAGGTTG TGGAGACTATTTTCGGGGCTTATAAAAGGGCAGTTGCGGCTCCCAAGATTGTTGTTGAGGATTTGCTGAAGAAAGGTTGTATCACTTATTATGCGTATGA ACTTCTGTATGATGGTATTAGAGATAAAAAGTTACTAAAGAAGAAAAGTTCGAGTTCGCCAAAAGATTACCCCCGGAAGGTCTCGCATCACGCTAGTTGA
AA sequence Show only first row Show all	>Lus10027267 pacid=23145374 polypeptide=Lus10027267 locus=Lus10027267.g ID=Lus10027267.BGIv1.0 annot-version=v1.0 MCSTLLPKHVASFIKYKTDLLKALETFNSVKGEDGFKHTLWTYKCMIEKLGSHGLFEAMEQVLMETRMNVDNNLLEGGYVGAMRNFGKKGRVQEAVDVFE RMDFYNCGPSVLSYNAIMSILVEYGHYTQVHKVYLRMRDKGIPPDIYTFTIWIKSFCKTERPHAALRLLNNMSSQGCEVNAVAYCTVIGGFYDRNCPLDG YDLFNRMLALDIFPENVTFNKLVHALWLCRAGALHRAVNMLDGMNKEVLVPDVVTYNTLISGLCKSNKVAEAESYLHKMVNAGLDPVAFTYNTIIHGYCK LDRAFSLFRKATGKGGLKRKVILYNTLVKGLCQQGHILQALDLMGEMSEKDCNPDTWAYNLLIDGLCKMGCVSDADNLMNDAIAKGCIPDIFTFNTLLDG FCKQLRMENAIELLHSMGNHDISPDVITYNTLLNGLCKSGKSEDVMETFKMMLERGCVPNLITYSILIESLCKSRKVNKAMELLEEIRGEGLVPDTVSYG TVINGLCNIGDLDRAYDLFERMNREYNIIHTTSTFNIMINGFAEKLNVEMAEKLFYRMCSPDDYTYRVMIDGFCKVWKIDSAYKFLVEMIKHRFVPSLMT FGRVVNCLCVQDRVNDAVRIVHLMVRNGFVPEVVETIFGAYKRAVAAPKIVVEDLLKKGCITYYAYELLYDGIRDKKLLKKKSSSSPKDYPRKVSHHAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10027267 [exp]	0	1
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	12.8	0.7247
AT5G17270			Protein prenylyltransferase su...		Lus10030019 [exp]	24.3	0.7394
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10008998 [exp]	27.1	0.7133
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	36.9	0.6879
AT1G74600		OTP87	organelle transcript processin...		Lus10024220 [exp]	38.2	0.6629
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	43.1	0.6970
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	47.9	0.6953
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	56.0	0.6441
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	63.9	0.6286
AT5G15550			Transducin/WD40 repeat-like su...		Lus10041271 [exp]	72.2	0.6831

Compare expression of checked genes

Lus10027267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.