Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22330 635 / 0 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 629 / 0 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT5G26742 481 / 8e-161 EMB1138 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) AT5G62190 306 / 2e-94 PRH75 DEAD box RNA helicase (PRH75) (.1) AT1G55150 252 / 7e-76 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 252 / 6e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 244 / 6e-72 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 244 / 1e-71 DEAD box RNA helicase family protein (.1.2) AT3G06480 250 / 4e-71 DEAD box RNA helicase family protein (.1) AT1G31970 239 / 8e-71 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038975 [exp] 934 / 0 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10031012 [exp] 743 / 0 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10035410 [exp] 738 / 0 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10001057 [exp] 480 / 7e-161 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10001425 [exp] 439 / 3e-145 AT5G26742 859 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10015020 [exp] 309 / 1e-95 AT5G62190 778 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10038898 [exp] 306 / 2e-94 AT5G62190 768 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10027388 [exp] 302 / 1e-92 AT5G62190 804 / 0.0 DEAD box RNA helicase (PRH75) (.1) Lus10031683 [exp] 267 / 1e-79 AT5G62190 748 / 0.0 DEAD box RNA helicase (PRH75) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G024100 [exp] 637 / 0 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.016G023100 [exp] 634 / 0 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.005G000100 [exp] 481 / 2e-160 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.005G000500 [exp] 476 / 8e-159 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.012G131000 [exp] 313 / 7e-97 AT5G62190 794 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.015G133400 [exp] 311 / 2e-96 AT5G62190 785 / 0.0 DEAD box RNA helicase (PRH75) (.1) Potri.013G158000 [exp] 254 / 3e-76 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 248 / 1e-73 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G038300 [exp] 246 / 1e-73 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G098800 [exp] 242 / 2e-71 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10027268 pacid=23145536 polypeptide=Lus10027268 locus=Lus10027268.g ID=Lus10027268.BGIv1.0 annot-version=v1.0 ATGTTAACGGCTTCTTTCACTCGCTCCTTGCCGCTGCATCGGCGGCCCACTTCTATCGCCACCGTGGAAGCTGTACCATTCGGAAGCTTTTCTTCCTCAA CAGCCTCTGTTCCGGTTAGAAATGGTTTCATTTCCTTCGGGTTTGGAGCTCTGTCTTCCTCACGCTCCGGGTTCCATACTCAAGCTGCTGGGAGGTTGAA TTACAAGGCCTCGACGATTTCTCCGGCCGATTTTGCTCTTGATTATGATTACCATGACGATGAAGACGACAGGGTTGGGGGTCGGAAAGTAGAAGAGAGT CGTAGTAGTAGTAGTAGTAGTAGTAAAGAGGAGGAAGGGCTTGTCATTTCCAAGCTTGGGATTTCTCAGGAAATCGTTTCCGCTTTGGCTAAGAAGGGAA TCACTAGTTTGTTTCCCATTCAGAGAGCTGTTCTTGTACCTGCAATGGAAGGAAAGGATTTGTTTGGGAGGGCTAGAACAGGAACAGGGAAAACGCTCGC CTTTGGAATTCCTATCATCGACAAAATCCTGAAGTACAATGCGAAGCGTGGGAGAGGAAGGAATCCCTTAGCATTGGTTATGGCACCAACAAGAGAGCTT GCAAAGCAAGTGGAGAAAGAGTTCCGTGAGTCGGCACCTAGTCTAGACACCTCCTGCATTTACGGTGGTGCGCCCATATATAGGCAGATGAGGGAGCTTG AATACGGGATTGATGTTTGTGTCGGGACTCCTGGTCGTATCATTGATCTGATGAACAGAGGAGCTCTAGACTTGTCCGAAATTCAGTTTGTTATTCTTGA TGAAGCAGATCAGATGCTTAATGTCGGCTTTGTAGATGACATAGAGTTGATTTTCCAGAAGTTGCCACCAAAGCGGCAGACCATGCTGTTCTCTGCCACT ATGCCAACTTGGATTAAGAAACTCGTCAGGAATTACCTAAAGAATCCACTGACTATTGATCTGGTTGGAGATTCAGATAAGAAGTTGGCTGATGGGATTA CCCTTTACTCGATCGCATCAAACTCATACCAAAAACCAGGAGTCCTTGGTCCGCTTATAACAGAACATGGAAAAGGTGGAAAGTGTATTGTTTTCACAGA AACCAAGCGTGATGCGGATCGTTTAGCATACGCTATGGCAAAAAGCCATAAATGTCAAGCATTGCATGGGGATATCACCCAAGCACAAAGAGAAAGGACA CTTTCAGGTTTTCGAGATGGAAAATTCAGTATATTAGTGGCAACTGATGTCGCTGCGCGTGGCCTCGATGTACCAAATGTTGATCTGGTAATTCACTATG CTATTCCCAATTCTCCCGAGACATTTGTTCATCGATCTGGTCGTACTGGTCGTGCTGGGAAAAAGGGAACTGCGATTCTTATTTACGGCCAGGATCAGAA CAGGCAACTCAGGATGATTGAACGGGAAGTGGGAGGAAGATTTACAGAGCTCCCTAGGATTGCTGTTGAGGATGAAAGCATCTTGAGTGACATGGCTAGC AGTCCCCGATTTGGCTCGAACGGAAGTTCTGGCAGTCGGAGTGGCAGCGGTGGTAGTGGCTATGGCGGAAGGCTTGGTAGTGGTTCAAGTAGCTACGGAT CTGGACGCAGTGGGGGTTCAGGCAGCTATGGCTCTGGACGCAGTGGTGGTTCAGGTGGCTACGGGTCTGGACGCACCGGTGGTTCAGGTGGCTACGGGTC TGGACGCAGTGGTGGTTCAGGTGGCTACGGTTCTGGACGTGGAGGTGGTTCAGGTAGCTACGGTTCTGGACGTGGAGGTGGTTACGGTGGCTCAGGATAC GGTCGTTCAGGAGGCAGTAGCAGCGGGCGTAACTATGGTGGTTCCTCGGGCAGGTCAGACCGAGGTGGCTCATATGAGAGCTACGGGTCAGGAGGGCGTT CAAGTAGATTCGAATTCGACGAGGACAGCTTATTCGGTTCGAACCGTGAAAGTGGTTCGCAGGGGGGTAGGGGTCGCCGATTCGGTGGCTATGAAGATGA CAGCGATTGA
AA sequence Show only first row Show all	>Lus10027268 pacid=23145536 polypeptide=Lus10027268 locus=Lus10027268.g ID=Lus10027268.BGIv1.0 annot-version=v1.0 MLTASFTRSLPLHRRPTSIATVEAVPFGSFSSSTASVPVRNGFISFGFGALSSSRSGFHTQAAGRLNYKASTISPADFALDYDYHDDEDDRVGGRKVEES RSSSSSSSKEEEGLVISKLGISQEIVSALAKKGITSLFPIQRAVLVPAMEGKDLFGRARTGTGKTLAFGIPIIDKILKYNAKRGRGRNPLALVMAPTREL AKQVEKEFRESAPSLDTSCIYGGAPIYRQMRELEYGIDVCVGTPGRIIDLMNRGALDLSEIQFVILDEADQMLNVGFVDDIELIFQKLPPKRQTMLFSAT MPTWIKKLVRNYLKNPLTIDLVGDSDKKLADGITLYSIASNSYQKPGVLGPLITEHGKGGKCIVFTETKRDADRLAYAMAKSHKCQALHGDITQAQRERT LSGFRDGKFSILVATDVAARGLDVPNVDLVIHYAIPNSPETFVHRSGRTGRAGKKGTAILIYGQDQNRQLRMIEREVGGRFTELPRIAVEDESILSDMAS SPRFGSNGSSGSRSGSGGSGYGGRLGSGSSSYGSGRSGGSGSYGSGRSGGSGGYGSGRTGGSGGYGSGRSGGSGGYGSGRGGGSGSYGSGRGGGYGGSGY GRSGGSSSGRNYGGSSGRSDRGGSYESYGSGGRSSRFEFDEDSLFGSNRESGSQGGRGRRFGGYEDDSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10027268 [exp]	0	1
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10038975 [exp]	1.4	0.9302
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10039334 [exp]	2.0	0.8815
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10043418 [exp]	2.0	0.8858
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	4.2	0.8845
AT3G50685			unknown protein		Lus10026029 [exp]	11.4	0.8791
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10019508 [exp]	13.6	0.8788
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	18.9	0.8492
AT4G38260			Protein of unknown function (D...		Lus10026547 [exp]	22.4	0.7503
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	25.5	0.8610
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	29.8	0.8560

Compare expression of checked genes

Lus10027268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.