Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56740 384 / 3e-135 Ubiquitin-associated (UBA) protein (.1) AT2G41160 348 / 3e-121 Ubiquitin-associated (UBA) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038976 [exp] 497 / 8e-180 AT3G56740 421 / 1e-149 Ubiquitin-associated (UBA) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040100 [exp] 405 / 2e-143 AT3G56740 432 / 3e-154 Ubiquitin-associated (UBA) protein (.1) Potri.016G035800 [exp] 341 / 1e-118 AT3G56740 380 / 7e-134 Ubiquitin-associated (UBA) protein (.1) Potri.006G197900 [exp] 43 / 0.0002 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10027269 pacid=23145423 polypeptide=Lus10027269 locus=Lus10027269.g ID=Lus10027269.BGIv1.0 annot-version=v1.0 ATGAACGGAGGTCCCTCTGGGTTCAACAATGCGCCAGTGACAAGAGCTTTCGTCATCGCTTCTACGCTCTTCTCACTCTTCTTTGGGATCAAGGGAAGGT CTGCCAAGTTTGGATTGTCCTATCAGGATATTTTTGGGAAGCTCCGGGTCTTGAAGCTGATTGCCTCAGTTTTTGCCTTCTCATCTACACCAGAATTGTT GTTTGGACTTGGTCTTTTGTATTACTTCAGAGTTTTTGAGAGGCAGATTGGATCAAACAAGTATTCAGTATTTATCTTGTTCTCTACAGTCGGGTCCTTG CTCTTTGAGGTCCTTGCACTATCACTTCTTAAAGATCCATCTTTGAACTTGCTCACGCCTGGACCTTATGGCCTCATTTTTGCTTCATTCGTGCCCTTTT TCTTCGACATTCCAGTATCCACATGGTTCCGTGTCTTCGGTATCCGCTTCTCCGATAAGTCCTTCATATATCTTGCCGGTCTGCAGCTTCTGTTATCATG CTGGAAAAGGTCTCTCATACCTGGAATCTGCGGCATCCTCGCTGGATCTTTGTATCGTCTGAATTTCCTTGGTATCCGTAAAGCAAAGTTCCCTGAATTC CTGGCTACATTTTTCTCGCGGTTTTCTTGGCCATCTACTGGAAGTCCCCGTGGATCAACAACTAGAGTTGGATCAGCAACTGTTCCATCACAAGCAGGTC GCCATGTTGAGAGAACCTATCCGACCCCAGCCCCTTCATCGGTAGAACCATCAGAGACCTCGATCACGACATTAGTCTCCATGGGATTCGACAGGAACTC GGCAAGACAAGCTCTTGTGCAGGCCAGGAACGACGTCAATATAGCCACCAACATCCTTCTTGAAGCTCAAGCACACTGA
AA sequence Show only first row Show all	>Lus10027269 pacid=23145423 polypeptide=Lus10027269 locus=Lus10027269.g ID=Lus10027269.BGIv1.0 annot-version=v1.0 MNGGPSGFNNAPVTRAFVIASTLFSLFFGIKGRSAKFGLSYQDIFGKLRVLKLIASVFAFSSTPELLFGLGLLYYFRVFERQIGSNKYSVFILFSTVGSL LFEVLALSLLKDPSLNLLTPGPYGLIFASFVPFFFDIPVSTWFRVFGIRFSDKSFIYLAGLQLLLSCWKRSLIPGICGILAGSLYRLNFLGIRKAKFPEF LATFFSRFSWPSTGSPRGSTTRVGSATVPSQAGRHVERTYPTPAPSSVEPSETSITTLVSMGFDRNSARQALVQARNDVNIATNILLEAQAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10027269 [exp]	0	1
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10021996 [exp]	1.7	0.8218
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	3.7	0.8263
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	4.0	0.8221
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10036241 [exp]	5.7	0.7680
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	8.8	0.7880
AT5G35080			unknown protein		Lus10008819 [exp]	9.4	0.8123
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10015639 [exp]	10.0	0.7573
AT3G42050			vacuolar ATP synthase subunit ...		Lus10020335 [exp]	14.5	0.7566
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	14.5	0.7688
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	16.9	0.7854

Compare expression of checked genes

Lus10027269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.