Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G37130 1348 / 0 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 1332 / 0 GNR1, NIA1 nitrate reductase 1 (.1) AT3G01910 206 / 1e-58 AT-SO, ATSO, SOX sulfite oxidase (.1.2.3) AT5G17770 153 / 2e-41 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1) AT5G20080 117 / 2e-28 FAD/NAD(P)-binding oxidoreductase (.1) AT2G32720 81 / 7e-18 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 80 / 2e-17 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT5G53560 79 / 3e-17 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G26340 77 / 3e-16 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT1G60660 65 / 3e-12 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038977 [exp] 1727 / 0 AT1G77760 1397 / 0.0 nitrate reductase 1 (.1) Lus10035402 [exp] 1347 / 0 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10031005 [exp] 603 / 0 AT1G77760 559 / 0.0 nitrate reductase 1 (.1) Lus10012532 [exp] 190 / 5e-50 AT3G01910 616 / 0.0 sulfite oxidase (.1.2.3) Lus10032048 [exp] 180 / 1e-49 AT3G01910 620 / 0.0 sulfite oxidase (.1.2.3) Lus10035213 [exp] 179 / 2e-49 AT3G01910 615 / 0.0 sulfite oxidase (.1.2.3) Lus10041560 [exp] 163 / 2e-44 AT3G01910 546 / 0.0 sulfite oxidase (.1.2.3) Lus10020310 [exp] 158 / 5e-43 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 157 / 2e-42 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172400 [exp] 1418 / 0 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 1389 / 0 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.001G330900 [exp] 202 / 2e-57 AT3G01910 686 / 0.0 sulfite oxidase (.1.2.3) Potri.004G194400 [exp] 155 / 3e-42 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 151 / 2e-40 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 149 / 4e-40 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 139 / 2e-36 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.006G218600 [exp] 129 / 1e-32 AT5G20080 511 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Potri.001G314200 [exp] 84 / 1e-18 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.002G242500 [exp] 83 / 1e-18 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03404 [flax] [poplar] Mo-co_dimer Mo-co oxidoreductase dimerisation domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain CL0072 [flax] [poplar] Ubiquitin PF00174 [flax] [poplar] Oxidored_molyb Oxidoreductase molybdopterin binding domain CL0072 [flax] [poplar] PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027270 pacid=23145497 polypeptide=Lus10027270 locus=Lus10027270.g ID=Lus10027270.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCCGTCGAAAACCGCCACCAGTTCCACCTCCAGCCACCACCTTCCTTAAACGGCACCCGTCCTTTCAAACCCACTCCCACAGCCGCCTCCA ATATCCCTTACCGCTTCTCCAACTCCAAACCCGTCGTCATTCCTCGAGATTCCGACGACGACGACGACGAAGATGACGTCAATCACTACGGAGATCTGAT ACGCAGGGGAAACAGCGAGCTGGAGCCGTCGATACTGGACCCACGAGACGAAGCCACCTCAGACAACTGGATCGAGCGAAACCCGTCGATGATCCGACTC ACTGGAAAGCACCCTTTCAACTGCGAGGCGCCCCTCGAGAGGCTCATGCACCACGGGTTCATAACTCCCGTCCCGCTCCACTACGTCCGCAACCACGGCC CCGTCCCCAGGGGCGCGTGGGAGAGCTGGTCCATTGAAATTTGCGGGCTGATCAAACGGCCGGTCCGCCTCACGATGGATCAGCTGGTCAGCGAGTTCCC CAGCAGGGAGCTACCTGTGACTCTGGTCTGCGCGGGAAACCGAAGGAAAGAGCAGAACATGACGAAGCAGAGCATCGGGTTCAACTGGGGCTCCGCCGGG GTGTCCACTTCTGTGTGGAAGGGCGTGCCGTTGCATCTGGTGCTAGAGCGGTGCGGGATCTACAGCAGGAAGAAGGGGGCGGTCAATGTGTGTTTCGAAG GGGCCGAGGATCTGCCAGCTGGCGGTGCGTCCGGTGGGTCCAAGTACGGGACGAGTCTGTGCAAGGAGTTCGCTATGGATCCGGCGCGTGACGTCATGTT GGCGTACATGCAGAACGGGGAGGTTCTGACTCCGGATCATGGGTTTCCAGTTCGGGTCATTATACCAGGGTTTATCGGGGGGCGGATGGTGAAATGGTTG AAGAGGATCGTCGTTACTACCAAGGAGTCGGAGAATTATTACCATTTTAAGGATAATCGAGTGCTTCCTTCTCATGTCGATGCCGAGCTCGCCAACTCCG AAGGTTGGTGGTACAAGCCGGAGTACATAATAAACGAGCTGAACATAAACTCGGTGATTACGACGCCGTCTCACGAAGAGGTGTTGCCGATCAACTCCTG GACAACTCAAAGGCCGTACACGTTGAAAGGATACGCATATTCAGGGGGTGGGAAGAAGGTGACACGTGTGGAAGTCACGATGGACAGAGGTGACACGTGG CAGCTTTGCGAGGTCGACCATCAAGAGAAGCCGAACAAGTACGGGAAGTATTGGTGCTGGTGCTTCTGGTCGCTAGAGGTCGAAGTGTTGGACCTGTTGG CCGCGAAAGAGATCGCCGTTCGAGCATGGGACCAGACCCTCAACACTCAACCCGAGAAGCTCATCTGGAATATCATGGGCATGATGAACAACTGTTGGTT CAGGATCAAAACCAACGTGTGCAAGCGGCACAAGGGCGAGATCGGGATCGTGTTCGAGCATCCGACGGTTCCGGGCAACAAATCGGGCGGATGGATGGCT AAGGAGAAGCATCTCGAGATGATCACCTCGGAGGCCAACCCGACACTAAAGAAGAGTGTCTCCACTCCCTTTATGAACACTTCATCCAAGACATTTTCAC CCGCCGACGTTAAGAAGCACAACTCCCCCGAATCGGCGTGGATCATCGTCCACGGCCATGTCTACGACTGCACTCACTTCCTCAAGGACCACCCCGGTGG GGCCGACAGCATCCTCATCAATGCCGGCACTGACTGCACCGAAGAGTTCGAGGCTATCCATTCCGACAAGGCACGAAAGCTCCTCGAGGACTACCGCATC GGGGAGCTTGTAAACGTCCCTTCGAACGCCTCTTCCCCCAATAGCTCTAACCATGGTGCCTCTAATTTGGCTCCCTTCTCTCAGTTGGCTCCCATTATTG AGACGACGATGATTCAACAACATCGTAGTGTGGCATTGGTCCCGCGCGAGAAAATCCCGTGCAAGCTGATCAAGAAGGAGTCGTTGTCTCATGACGTTCG GTTGTTCCGATTCGCGCTCCCGTTCGAGGACCAGCAGATGGGGCTTCCCGTCGGAAAGCACATATTCTTGTGTGCTACCGTGCACGGGAAGCTATGCATG AGGGCCTACACTCCGACAACGTTGGTCGATGCTGTGGGCCATTTCGACCTCGTGGTGAAGGTCTATTTTGGTGGGGTGCATCCCAAGTTTCCTAACGGTG GGGTCATGTCGCAATATCTCGACAAGCTCGAGGTGGGGTCGACGGTGGAGGTCAAAGGTCCGTTGGGCCACATAGAGTACATGGGCCGAGGGAAATTTAC TGTTCACGGCAAGCCCAAATTCGCAAAGAAGCTTGCCATGCTGGCGGGTGGGACCGGGATCACGCCGATATACCAGGTGGCGCAGGCTGTGTTGCGGGAC CCAAAAGATCGGACGGAGATGCATATAGTGTACGCAAATCGGACAGAGGACGACATCCTATTGAGGGACGAGCTGGACGAGTGGGCCCGGACCGACAAGC GGCTCAAAGTGTGGTACGTGGTGCAAGAGTCCATAAAGGAAGGGTGGGAGTACAGTACGGGGTTCATCACGGAAGGCATCCTGAGGGATCATATTCCGGC AGGATCGTCGGACGGTGAGGTGCTGGCTTTGGCTTGTGGGCCGCCGCCGATGATCCAGTTTGCGGTACAGCCCAAATTGGAGAAGCTGGGGTATGATGTG AAGGAGTCTCTGATGGTGTTTTAG
AA sequence Show only first row Show all	>Lus10027270 pacid=23145497 polypeptide=Lus10027270 locus=Lus10027270.g ID=Lus10027270.BGIv1.0 annot-version=v1.0 MAASVENRHQFHLQPPPSLNGTRPFKPTPTAASNIPYRFSNSKPVVIPRDSDDDDDEDDVNHYGDLIRRGNSELEPSILDPRDEATSDNWIERNPSMIRL TGKHPFNCEAPLERLMHHGFITPVPLHYVRNHGPVPRGAWESWSIEICGLIKRPVRLTMDQLVSEFPSRELPVTLVCAGNRRKEQNMTKQSIGFNWGSAG VSTSVWKGVPLHLVLERCGIYSRKKGAVNVCFEGAEDLPAGGASGGSKYGTSLCKEFAMDPARDVMLAYMQNGEVLTPDHGFPVRVIIPGFIGGRMVKWL KRIVVTTKESENYYHFKDNRVLPSHVDAELANSEGWWYKPEYIINELNINSVITTPSHEEVLPINSWTTQRPYTLKGYAYSGGGKKVTRVEVTMDRGDTW QLCEVDHQEKPNKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDQTLNTQPEKLIWNIMGMMNNCWFRIKTNVCKRHKGEIGIVFEHPTVPGNKSGGWMA KEKHLEMITSEANPTLKKSVSTPFMNTSSKTFSPADVKKHNSPESAWIIVHGHVYDCTHFLKDHPGGADSILINAGTDCTEEFEAIHSDKARKLLEDYRI GELVNVPSNASSPNSSNHGASNLAPFSQLAPIIETTMIQQHRSVALVPREKIPCKLIKKESLSHDVRLFRFALPFEDQQMGLPVGKHIFLCATVHGKLCM RAYTPTTLVDAVGHFDLVVKVYFGGVHPKFPNGGVMSQYLDKLEVGSTVEVKGPLGHIEYMGRGKFTVHGKPKFAKKLAMLAGGTGITPIYQVAQAVLRD PKDRTEMHIVYANRTEDDILLRDELDEWARTDKRLKVWYVVQESIKEGWEYSTGFITEGILRDHIPAGSSDGEVLALACGPPPMIQFAVQPKLEKLGYDV KESLMVF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	0	1
AT2G15620		ATHNIR, NIR1	ARABIDOPSIS THALIANA NITRITE R...		Lus10014059 [exp]	1.7	0.8338
AT5G62720			Integral membrane HPP family p...		Lus10033103 [exp]	2.0	0.8195
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	4.6	0.8036
AT3G28580			P-loop containing nucleoside t...		Lus10004258 [exp]	8.1	0.6784
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	17.7	0.6830
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	22.4	0.6884
AT2G15220			Plant basic secretory protein ...		Lus10013868 [exp]	28.6	0.6501
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10038022 [exp]	29.1	0.6515
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	32.0	0.6577
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	33.9	0.6724

Compare expression of checked genes

Lus10027270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.