Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58730 419 / 6e-150 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038979 [exp] 496 / 2e-180 AT3G58730 441 / 9e-159 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331800 [exp] 431 / 7e-155 AT3G58730 412 / 4e-147 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01813 [flax] [poplar] ATP-synt_D ATP synthase subunit D
Representative CDS sequence Show only first row Show all	>Lus10027271 pacid=23145549 polypeptide=Lus10027271 locus=Lus10027271.g ID=Lus10027271.BGIv1.0 annot-version=v1.0 ATGTCAGGCCAAGGAAATCGCTTGAATGTAGTCCCAACAGTCACAGTGCTAGCAGTTGTGAAAGCTCGGCTTATTGGCGCTACAAGGGGACATGCACTTC TGAAGAAGAAGAGTGATGCTTTAACTGTGCAATTTCGCCAAATTCTAAAGAAGATTGTATCAACTAAAGAGTCAATGGGAGATATCATGAAGGCCTCCTC CTTTGCCCTCACCGAGGCAAAGTACGTAGCCGGCGAGAACATCAAGCACGTCGTCCTGGAGAACGTGAAGAGCGCATCTCTTAAAGTCCGATCTCGTCAA GAGAATGTCGCCGGTGTGAAGCTGCCAAAGTTCGAATACATCTCCGAGGGCGACACCAAGAACGACCTAACTGGACTGGCCAGAGGTGGGCAGCAGGTCC AGAAATGCCGCGGCGCTTATATCAAAGCAATCGAGGTTCTCGTCGAGCTCGCCTCGCTGCAGACATCGTTCGTAACACTCGACGAGGCAATCAAGACGAC AAATCGCAGGGTGAACGCACTCGAGAATGTGGTGAAGCCCCGACTGGAGAACACGATCTCCTACATAAAGGGGGAGCTGGACGAGCTCGAAAGAGAAGAC TTCTTCAGGCTGAAGAAGATCCAAGGGTATAAGAAGAGGGAGATCGAGAAGCAGAAGGCTAACTCGAAGGAGTTTGCAGAGGAACAGGTTGCTGAGAAGC TGTCTTTGCAGAGAGGTATCTCAGTAGCTTCTACTCAGAATATGTTGGCTGCAGGTGGCGCCAAGGATGATGATATCATCTTTTGA
AA sequence Show only first row Show all	>Lus10027271 pacid=23145549 polypeptide=Lus10027271 locus=Lus10027271.g ID=Lus10027271.BGIv1.0 annot-version=v1.0 MSGQGNRLNVVPTVTVLAVVKARLIGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGDIMKASSFALTEAKYVAGENIKHVVLENVKSASLKVRSRQ ENVAGVKLPKFEYISEGDTKNDLTGLARGGQQVQKCRGAYIKAIEVLVELASLQTSFVTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELERED FFRLKKIQGYKKREIEKQKANSKEFAEEQVAEKLSLQRGISVASTQNMLAAGGAKDDDIIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58730			vacuolar ATP synthase subunit ...		Lus10027271 [exp]	0	1
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	1.4	0.8636
AT4G35690			Arabidopsis protein of unknown...		Lus10041834 [exp]	2.0	0.7665
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016486 [exp]	4.0	0.8073
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10026575 [exp]	5.2	0.7838
AT2G44525			Protein of unknown function (D...		Lus10007556 [exp]	13.0	0.7071
AT5G21050			unknown protein		Lus10019547 [exp]	16.9	0.7225
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10011640 [exp]	17.5	0.7092
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10004963 [exp]	18.2	0.7661
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	24.7	0.7625
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	25.1	0.7119

Compare expression of checked genes

Lus10027271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.