Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14368 1243 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 1198 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 955 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 941 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 809 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 731 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 626 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT3G47660 616 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 545 / 3e-177 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 172 / 3e-46 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038991 [exp] 1959 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10030999 [exp] 1639 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10018904 [exp] 972 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 962 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 957 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 957 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10024157 [exp] 805 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 805 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 781 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167500 [exp] 1338 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G070300 [exp] 989 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 984 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.009G071800 [exp] 857 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 827 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 816 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 755 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 755 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 558 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 492 / 2e-156 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10027273 pacid=23145544 polypeptide=Lus10027273 locus=Lus10027273.g ID=Lus10027273.BGIv1.0 annot-version=v1.0 ATGGCAGATTTTCCTACTTACCTTTCCAATTCCGATCGCGACATTGACCAGGGGCTCATTGCTCTGAAGAAGGGGACTCAGTTGATCAAATACAGCCGCA AAGGGAAACCCAAGTTTCGTGCCTTCAGACTCTCTCCGGACGAGACAGCATTGATTTGGTTATCCCACGGACATGAAAAGAATCTGAAGCTATCTTCTGT ATCTCGGATCCTTCCCGGTCAAAGAACTCCTGTGTTTAGGAGGTACCTGCGTCCTGAAACAGATTGCCTCTCATTTTCCCTCATTTACAACAACGGTGAC AGATCTCTTGATCTGATCTGCAAAGACAAAGTTGAGGCAGAGGTTTGGCTTGCATGCCTTAAGGCCATCCTTAGAAGAAATCGGGGTAGACGAACCACAA GTGATATTTCGGATCTAACTGCAGGTGGAGATTACTTTCGGCTTGGTCTAGACCTCGCACCAACCCTTAATCAGGGTCGAGTCTCGATCGATGTACTTCC TCGCGATCTAGCTGGTGGCTCAGCGTATGCAAATATGCAGCTAAGACCGAGTAATGTCGATGGTGGTATTCGGATTAGTGTTTCCAGCACTCCAAGTACG TTTAGTGTCGGATCTGGTGCAGATGATATCGAATCATTAGGTGATGTTTACATGTGGGGGGATGTATGGAGTGGCAGCTTCTCCCCTGAAGTTCCTGTCA CCTCTCCTTCTTCGCGAATCGATATACTGGTTCCAAAACCTTTGGAATCGAACGTTGTTCTCGACGTACATCAGATTGCTTGTGGGGAGCGGCATGTCGC TCTTGTTACGAGGCAAGGGGAGGTTTTCACTTGGGGAGATGAATGCGGGGGTAGGCTCGGACACGGAGTCGAAAAAGATTTCAGCCGTCCTAGAGTTGTC GAGGTCCTCGCAGTTACTAACGTCGAATTCGTGGCGTGTGGTGAACAACACACGTGTGCGGTATCCTCATCGGGTGACTTGTTTACATGGGGCGATGGAA GCCACAACGCGGGACTTCTCGGTCATGGAAGCGATGTAAGCCACTGGATACCGAAAAGGGTGTCCGGTGCTTTAGAAGGACTCCAAGTTCTATCCATTGC TTGTGGCTCGTGGCATTCCGCTCTGGCAACTTCGAGTGGGAAGTTATTCACTTTCGGAGACGGGGCATTTGGTGTTCTAGGCCATGGCGATCAAGAAAGT GTTGCGTTTCCGAAAGAAGTCCAGTTGTTGAGTGGGTTAAGGACCATGAAAGTTGCTTGTGGTGTATGGCATACCGCAGCTATAGTCGAGGTTATGGGAC AACCCGGTGCGACCATGTCGTCGAGAAAGTTGTTCACTTGGGGCGATGGGGACAAATATCGACTCGGACATGGAAACAAAGAGACATATCTTCTTCCCAC TTGTATATCGTCCCTTATTGACTACAACTTTCACCAGTTAGCTTGTGGACATAACATGACAGTGTCTCTTACTACCTCAGGCCATGTTTTTACAATGGGG AGCACTGCGTATGGCCAGCTGGGAAATCCCAGCTCGGACGGGAAATCGCCTTGTTTAGTTCAAGACAGATTGGTTGGCGAATTCGTCGAAGAAATCTCTT GTGGCGATTTCCACGTCGCCGTGCTTACCTCGAGAAGCGAAGTGTTCACTTGGGGGAAAGGTGGCAACGGAAGATTGGGACATGGAGACACAGAGGATAG GAAATCTCCAACGTTAGTTGAAGCACTCAAGGACAAGCATGTGAAGAGTATATCATGCGGTTCGAATTTTACGTCGAGTATATGCATCCATAAATGGGTT TCGGGAGCTGACCAGTCGGTTTGTTCGGGTTGTCGACAAGCGTTCGGGTTTACTAAGAAGAGGCACAACTGCTATAACTGTGGTCTGGTGCATTGCCATT CTTGCAGCTCCAAAAAGGCCTTGAGAGCTGCCTTAGCTCCCACACCGGGGAAGCCACATCGAGTATGCGATGCTTGTTACGCGAAACTCAAAGCCGGTGG TGATTCCGGTAACCCTGCTAACATGAACAGGAAGCACACAACAACGCAGCATCCACGCCGGTCATCGGCAGACATGACTGCTAAAATCGATTTCGCCTTC CGCCCCTCGAAAGTTTTGTTATCTCCAACTACCGAGCCTGTGAAGTACTTGGAGATAAGACACGGAAAGCCAGGGACGAAATGCGACGATTCCTCGATAG TACGAGAATCTCAGGTTCCTGGACTGGTGCAACTAAAAGATGTAGCATTTCCAAGCTCTCTCAGCGCTATACAAACAGCACTGAAGCCTACTCCTCTTCC TTCGTACCATTATCAACCGCCTATTAGTATCACACCGCAGCCTCCCACTAGCTCGAGATCTTCTTCCCCGTACAGGAGACCGAGCCCTCCTCGATCTGTA GGCGGTGGAGTTTCGAGGAGTGTCATTGAAAGCCTCAGGAAGACGAATGATATCATGAAGCAAGACATGTCAAAACTTCAAAGTCAAATCAAAGCATTGA AGCAAAAATGTGACACGCAAGACAAGGCAAACCAGCAGCTTCAACAAGCAGTTAAAGAAGCTGCTTCATTTGCTTCAGAAGAATCTTCGAAGCTTCGGAT TGCCAGGGAAGTCGTAACTTCAATTACAGACCAGTTGAAAGAAGTAAGAAACCAGCTACCTCCTGAAGTGGAGGGTACTGAAGCATTGAAGGCCGTTGAT GCAAAAATCGAAGCTTTTCTAAGCGCATACGAACCATCTGAACTGCCGAAAAGCTTGGACTCTGAGATGAAAAATGAACAAGCGAATGCATCAGAACACA AGAAAGTGGAATCTGGACAAACAAATGAAGAGGGTAGTGGTGAAAGTGACACCAAGATAAAGCTGGAGTCATCGTCGTCTAGAAAGGATAGTCAGCGAGA AATCATCGAGCAATTCGAACCGGGAGTTTACGTGACTTTTGTCCAGCATCCTAACGGTATGAAGATGTTTAAACGAGTCAGATTCAGCAAACGAAAGTTT CAGGAGCAGCAAGCAGAAGTATGGTGGAAGGAGAACAAAGAGCGGCTTCTTAAGCGATACCTTCCTCCGAAATCTGGATCGTCTTCCCATCATGCACCAG CTACTACTACTGCAGCACCTGCTCCGACTGAATCTTCAACTAATCCAACTCCTCCTGTTGATGATCCTCAGGAAACAAGTGACGAGGCAGGGAAATCTGA AACTTAA
AA sequence Show only first row Show all	>Lus10027273 pacid=23145544 polypeptide=Lus10027273 locus=Lus10027273.g ID=Lus10027273.BGIv1.0 annot-version=v1.0 MADFPTYLSNSDRDIDQGLIALKKGTQLIKYSRKGKPKFRAFRLSPDETALIWLSHGHEKNLKLSSVSRILPGQRTPVFRRYLRPETDCLSFSLIYNNGD RSLDLICKDKVEAEVWLACLKAILRRNRGRRTTSDISDLTAGGDYFRLGLDLAPTLNQGRVSIDVLPRDLAGGSAYANMQLRPSNVDGGIRISVSSTPST FSVGSGADDIESLGDVYMWGDVWSGSFSPEVPVTSPSSRIDILVPKPLESNVVLDVHQIACGERHVALVTRQGEVFTWGDECGGRLGHGVEKDFSRPRVV EVLAVTNVEFVACGEQHTCAVSSSGDLFTWGDGSHNAGLLGHGSDVSHWIPKRVSGALEGLQVLSIACGSWHSALATSSGKLFTFGDGAFGVLGHGDQES VAFPKEVQLLSGLRTMKVACGVWHTAAIVEVMGQPGATMSSRKLFTWGDGDKYRLGHGNKETYLLPTCISSLIDYNFHQLACGHNMTVSLTTSGHVFTMG STAYGQLGNPSSDGKSPCLVQDRLVGEFVEEISCGDFHVAVLTSRSEVFTWGKGGNGRLGHGDTEDRKSPTLVEALKDKHVKSISCGSNFTSSICIHKWV SGADQSVCSGCRQAFGFTKKRHNCYNCGLVHCHSCSSKKALRAALAPTPGKPHRVCDACYAKLKAGGDSGNPANMNRKHTTTQHPRRSSADMTAKIDFAF RPSKVLLSPTTEPVKYLEIRHGKPGTKCDDSSIVRESQVPGLVQLKDVAFPSSLSAIQTALKPTPLPSYHYQPPISITPQPPTSSRSSSPYRRPSPPRSV GGGVSRSVIESLRKTNDIMKQDMSKLQSQIKALKQKCDTQDKANQQLQQAVKEAASFASEESSKLRIAREVVTSITDQLKEVRNQLPPEVEGTEALKAVD AKIEAFLSAYEPSELPKSLDSEMKNEQANASEHKKVESGQTNEEGSGESDTKIKLESSSSRKDSQREIIEQFEPGVYVTFVQHPNGMKMFKRVRFSKRKF QEQQAEVWWKENKERLLKRYLPPKSGSSSHHAPATTTAAPAPTESSTNPTPPVDDPQETSDEAGKSET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	0	1
AT5G46940			Plant invertase/pectin methyle...		Lus10015199 [exp]	4.9	0.8674
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	5.5	0.8967
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	5.7	0.8928
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10023980 [exp]	8.0	0.8418
AT4G21910			MATE efflux family protein (.1...		Lus10039673 [exp]	9.6	0.8824
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	10.8	0.8635
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020332 [exp]	13.3	0.8003
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	15.0	0.8680
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	15.2	0.8662
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032218 [exp]	21.4	0.8331

Compare expression of checked genes

Lus10027273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.