Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) AT2G40990 447 / 3e-156 DHHC-type zinc finger family protein (.1) AT3G56930 421 / 2e-145 DHHC-type zinc finger family protein (.1.2) AT3G56920 416 / 4e-145 DHHC-type zinc finger family protein (.1) AT3G26935 313 / 3e-103 DHHC-type zinc finger family protein (.1) AT4G24630 309 / 3e-102 DHHC-type zinc finger family protein (.1) AT3G48760 306 / 2e-100 DHHC-type zinc finger family protein (.1) AT5G41060 299 / 3e-98 DHHC-type zinc finger family protein (.1.2) AT5G50020 299 / 6e-98 DHHC-type zinc finger family protein (.1.2) AT4G22750 87 / 8e-19 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038990 [exp] 800 / 0 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10035395 [exp] 615 / 0 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10030997 [exp] 483 / 4e-167 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 413 / 2e-142 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 391 / 3e-130 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10016754 [exp] 325 / 2e-107 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 324 / 3e-107 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 322 / 1e-106 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 318 / 2e-105 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025200 [exp] 506 / 4e-180 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 500 / 2e-177 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 414 / 9e-142 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 393 / 6e-134 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.015G101900 [exp] 327 / 2e-108 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 317 / 5e-105 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 315 / 1e-104 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 316 / 2e-104 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 314 / 9e-104 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 314 / 1e-103 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10027274 pacid=23145407 polypeptide=Lus10027274 locus=Lus10027274.g ID=Lus10027274.BGIv1.0 annot-version=v1.0 ATGATTCCTCCTAATCTCAACACATTCAGGCTTTATCAGCTTTGGAAGGGTAACAATAAATTTCTATGTGGTGGGAGATTAGTATTCGGCCCGGATGCTG CTTCGTTGTTCTTGACATCGTTCTTAATTGGAGGCCCTGCGATCACATTCTGCTTCAAAATGTTGCTAATGATCGGCAAAGATCCCGCCTTTAACTACCC TGTACTCGTCGGTGGATGGATTCTCCTTGTTATGGACTTTGCATTCTTGTTCATGACATCAAGCAGAGATCCCGGAATCATCCCGAGGAACTCCAAGGCG CCCGAGATGGACGAATTATCACTCGACATGACGACGTCGTCGATGGAGTGGGTGAACAACAGACTAGCAAACTACAAACTTCCCAGGACAAAAGATGTCT TCATCAATGGTTACAGTGTCAAAGTCAAGTTCTGCGAAACTTGCTTGCTGTATCGTCCTCCGAGAGCCTCCCACTGCTCCATCTGCAACAACTGCGTCCA GAAGTTCGACCATCACTGCCCTTGGGTTGGTCAGTGCATTGCATTGAGGAACTACCCGTTCTTCATATGCTTCATATCAGCATCAACCATGCTGTGCATA TACGTGTTTGTGTTCTCGTGGATCAACATAATCCGACAGAAGGGAAGTTTGATGAGTGTTCTGTCCAATGACATCATCTCCCTCACTTTGATCATCTACT GCTTCATTGCCATCTGGTTTGTGGGAGGGCTCACTGTCTTCCACTTTTACTTGATCTCCAGAAACCAAACGACTTACGAGAACTTCCGGTATCGTTACGA CAAGAAGGAGAACCCATTCAGAAGAGGGGTGTTGCATAATTTCAAAGAAGTGTTCGTGTCGGACATTCCTCCGTCGGCGGTGAACTTCAGAGAATGGGTG GCTCCGGAGATCATCAAAGATTCGGTGAGGAGCACCGAGGACATGATCATGAGCGAGAGCATCAGCACTTACAGGGGATCCAAGGAGGAATTCGATATGG AAATGGGAGGAGATAAGCTTGGAAAAGAAGGGACTAGGCTCCCACCCATACTGCAGAGCTTGGATTATGCCAGTAGTTTTAACGATGTCGACGAAGACGA CAAAATTTTGATGAAGAAGAACATTGATGTCAATGGAGGTTCTGCATTTGACTCCTCGTACGTGTTGTCAGATCATTATGGTGCGCACGACAGGGTCATC AATGGCGGAACGACGTAA
AA sequence Show only first row Show all	>Lus10027274 pacid=23145407 polypeptide=Lus10027274 locus=Lus10027274.g ID=Lus10027274.BGIv1.0 annot-version=v1.0 MIPPNLNTFRLYQLWKGNNKFLCGGRLVFGPDAASLFLTSFLIGGPAITFCFKMLLMIGKDPAFNYPVLVGGWILLVMDFAFLFMTSSRDPGIIPRNSKA PEMDELSLDMTTSSMEWVNNRLANYKLPRTKDVFINGYSVKVKFCETCLLYRPPRASHCSICNNCVQKFDHHCPWVGQCIALRNYPFFICFISASTMLCI YVFVFSWINIIRQKGSLMSVLSNDIISLTLIIYCFIAIWFVGGLTVFHFYLISRNQTTYENFRYRYDKKENPFRRGVLHNFKEVFVSDIPPSAVNFREWV APEIIKDSVRSTEDMIMSESISTYRGSKEEFDMEMGGDKLGKEGTRLPPILQSLDYASSFNDVDEDDKILMKKNIDVNGGSAFDSSYVLSDHYGAHDRVI NGGTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	0	1
					Lus10005514 [exp]	1.4	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	2.4	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	3.0	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	3.5	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	4.5	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	4.6	1.0000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	4.9	1.0000
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	5.7	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	6.6	1.0000
AT5G27260			unknown protein		Lus10032874 [exp]	6.9	1.0000

Compare expression of checked genes

Lus10027274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.