Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56950 249 / 1e-83 SIP2;1, SIP2 small and basic intrinsic protein 2;1 (.1.2) AT5G18290 92 / 3e-22 SIP1B, SIP1;2 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) AT3G04090 87 / 1e-20 SIP1A, SIP1;1 small and basic intrinsic protein 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038989 [exp] 470 / 1e-170 AT3G56950 248 / 5e-83 small and basic intrinsic protein 2;1 (.1.2) Lus10035395 [exp] 334 / 3e-111 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10030997 [exp] 320 / 4e-106 AT3G56930 332 / 1e-107 DHHC-type zinc finger family protein (.1.2) Lus10035281 [exp] 92 / 2e-22 AT3G04090 176 / 9e-55 small and basic intrinsic protein 1A (.1) Lus10030046 [exp] 89 / 5e-21 AT3G04090 172 / 2e-53 small and basic intrinsic protein 1A (.1) Lus10021989 [exp] 62 / 1e-10 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042528 [exp] 0 / 1 AT5G18280 684 / 0.0 apyrase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024900 [exp] 296 / 3e-102 AT3G56950 303 / 1e-104 small and basic intrinsic protein 2;1 (.1.2) Potri.006G027200 [exp] 279 / 2e-95 AT3G56950 264 / 1e-89 small and basic intrinsic protein 2;1 (.1.2) Potri.013G053400 [exp] 112 / 3e-30 AT3G04090 224 / 6e-74 small and basic intrinsic protein 1A (.1) Potri.019G030900 [exp] 99 / 7e-25 AT3G04090 236 / 3e-78 small and basic intrinsic protein 1A (.1) Potri.014G154400 [exp] 97 / 3e-24 AT5G18290 183 / 2e-57 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2) Potri.002G227500 [exp] 96 / 1e-23 AT5G18290 165 / 2e-50 SMALL AND BASIC INTRINSIC PROTEIN 1B, Aquaporin-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10027275 pacid=23145578 polypeptide=Lus10027275 locus=Lus10027275.g ID=Lus10027275.BGIv1.0 annot-version=v1.0 ATGGCTCCTGCCGGGCCGTGGAAGGGCCGTCTGCTGGTGGCGGATTTCGCCATGTCGTTCATGTGGGTGTGTTCCGGGCCATCGATGAAGTTGTTCGTGG AAGAAATTCTCGGGATGCACGCTCACACCACCGTGTCAGAAATCGTGAAATGTGCTTCCTCTGTTATCAATATGTTCTTCTTCGCCCTATTAGGCAAATT CAGCCAGGGAGGAACTTACAATCCTCTCAATGTCTTGTCTGATTTGATCGTCGTCGGAGATTTCGAACACTTCCTCTTCGTCGTGGGTGCCCGTATCCCT ACCCAGGTGATTGGATCGATATCGGGGGTTAGGTTCATGATCAAGAGCATTCCCGAAATAGGATCGGGCCCGCGGTTACAAGTGGACATTCACAACGGCG CCATAACGGAAGGGCTGCTTACGTTCGCCATCGTGATGATCTCTCTCGTGCTCACGAGAGAGATCCCGGGAAGTTTCTTCAGGAAAACTTGGATCGCAAG TCTCATGAAACTAACCCTTAATATACTCGGCTCGGATCTCACGGGCGGATGCATGAACCCTGCGTCGGTGATGGGATGGGCTTACGCGCGTGGGGACCAC CTCTCGAACGAGCACATATTCGTGTACTGGGTTGCCCCAGTTGCGGCCACTCTGCTAGCCGTTGGAATATTCAAACTAGTTGTTGCACATTCAAAGAAGG AAACTAATGTTGAAAAAGAGGATTCAAACAAGTCAGATTGA
AA sequence Show only first row Show all	>Lus10027275 pacid=23145578 polypeptide=Lus10027275 locus=Lus10027275.g ID=Lus10027275.BGIv1.0 annot-version=v1.0 MAPAGPWKGRLLVADFAMSFMWVCSGPSMKLFVEEILGMHAHTTVSEIVKCASSVINMFFFALLGKFSQGGTYNPLNVLSDLIVVGDFEHFLFVVGARIP TQVIGSISGVRFMIKSIPEIGSGPRLQVDIHNGAITEGLLTFAIVMISLVLTREIPGSFFRKTWIASLMKLTLNILGSDLTGGCMNPASVMGWAYARGDH LSNEHIFVYWVAPVAATLLAVGIFKLVVAHSKKETNVEKEDSNKSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56950		SIP2;1, SIP2	small and basic intrinsic prot...		Lus10027275 [exp]	0	1
AT1G71980			Protease-associated (PA) RING/...		Lus10000053 [exp]	7.9	0.7826
					Lus10013898 [exp]	11.5	0.7801
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	14.5	0.7670
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	18.4	0.7625
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	20.1	0.7257
					Lus10006661 [exp]	20.1	0.7576
					Lus10007179 [exp]	22.0	0.7576
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10009378 [exp]	23.8	0.7576
					Lus10022573 [exp]	25.5	0.7576
					Lus10012429 [exp]	27.0	0.7576

Compare expression of checked genes

Lus10027275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.