Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10740 794 / 0 ATASD1, ARAF1, ARAF, ASD1 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) AT5G26120 733 / 0 ATASD2, ASD2 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 2, alpha-L-arabinofuranosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038988 [exp] 1113 / 0 AT3G10740 972 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Lus10031008 [exp] 669 / 0 AT3G10740 783 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Lus10035405 [exp] 148 / 1e-40 AT3G10740 191 / 9e-57 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025500 [exp] 833 / 0 AT3G10740 999 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1) Potri.006G027700 [exp] 806 / 0 AT3G10740 999 / 0.0 ARABIDOPSIS THALIANA ALPHA-L-ARABINOFURANOSIDASE 1, alpha-L-arabinofuranosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF06964 [flax] [poplar] Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027276 pacid=23145466 polypeptide=Lus10027276 locus=Lus10027276.g ID=Lus10027276.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGCCTCTTCCTCTTACTTGCTCTGCTGCTTTATTGCTGCTATCGCTGTATGCTTGGTCACTCCATCTCTTGTTGACGGAGCACTTGAAG CCAATCTCACCGCCAAATTGTCTGTCGACGCCTCCGTTCGCCGGACTATTCCTAGTACTCTCTTTGGGATTTTTTTCGAGGAGATTAATCATGCGGGAGC TGGTGGGCTGTGGGCTGAACTTGTGAGCAACAGAGGATTTGAGGCTGGCGGTGCTAACATCCCCTCAAATATAGATCCATGGACAACATTGCGCAATAAG ATTGCTCTTCGACTTGATGTGCTCTGTGACGTTAAAAGTTGTCCAGCTGGAGGAGTTGGTGTGTACAACCCTGGATACTGGGGCATGAATATTGTGAAGG GAAAGAAATATAAACTGGTCCTTTATGTTCGTTCATTCGATGCTATTGATGTATCCGTGTCATTGACTGGATCGAGTGGAGCACTGACATTGTCTACTAC CAGCATCAAAGCTTTTGCTTCAGATGTTTCAAACTGGACAAAGGTGGAGGGCTTACTTGAAGCCAAGGAATCTGATCAAAGTGCAAGACTTGAATTGCGA ACATCCACGAAGGGCGTAATTTGGTTTGACCAAGTGTCATTGATGCCTGAAGATACATACAAGGGGCACGGTTTTCGAACTGAGCTTTTTGAAATGCTTC AAGAGATAAAACCTCGATTTCTCAGATTCCCAGGTGGCTGTTTCGTCGAAGGTGAATGGCTAAGGAATGCATTCCGCTGGAAGGAATCAATTGGTCCTTG GGAGGAGAGACCTGGGCACTTCGGGGACGTTTGGATGTATTGGACTGATGATGGACTTGGTTACTATGAATTTCTTCAACTAGCTGAAGATCTGGATACA TTGCCTATATGGGTGTTCAATAATGGTATTAGCCACCAAGACCAAGTTGATACTGCCAGCATCTTACCTTTCGTGCAAGAAGCCCTCGATGGTCTTGAGT TTGCTCTAGGTGATGCTGGGTCTAAGTGGGGTTCTGTTCGAGCTGCTATGGGACACCCTGCACCTTTTAACTTGAAATATGTCGCCATCGGGAATGAGGA CTGTGGAAAGAAGAACTATCGAGGAAATTACCTGAAGTTCTATGAAGCTATTAAACGTGACTATCCTGGTATCCAGATGATCTCAAATTGTGATGGCTCA GTTAATCCTTTGGATCATCCAGCAGAGTTTTATGATTTTCATGTTTATACATCTGCCAGCAATCTGTTCTCTATGTCCCATCAATTTGATCGCACATCAC GCAGTGGTCCAAAGGCTTTTGTGAGTGAATATGCTGTGACTGGAAAAGATGCTGGCACAGGTAGTCTCTTAGCTGCACTTGCTGAAGCTGCATTCCTCAT TGGGGTAGAAAAAAACAGTGATATTGTTGAGATGGCTAGCTATGCACCACTCTTTGTCAATACCAATGATAGGCGGTGGAACCCAGACGCAATTGTTTTC AATGCTTCAAAGGCATACGGAACTCCTAGCTACTGGATGCAGCGTTTCTTTGCAGAGTCTAGCGGGAGTTATCTTCTCAATTCCACGCTTCAAACAACTT CCTCGAGCTCACTTGTTGCGTCCGCAATTTCTTGGCAAGACTCGAAGGACAGCAGTACTTACATCAGAATAAAGGTTGTGAACTTCGCAAGCAGCACCGT TAATCTCAAGATTTCTGTCAGTGGTTTGGGTGTCAACTCCGTAGGTGTATCCGGATCGACAAAGACCGTACTCACATCTGCTAATGTAATGGATGAGAAC TCCTTCCAGCAAACAAATAAGGTGGCACCAACTCAAAGTCAGCTGCAGAATGCCGGAAAGGACATGGATGTGCAACTCTCTCCAAATTCCATAACTTCGT TTGATTTGTTAACCCACTCACACTCCATCCGGACGCGAAAAGCTGGTCCTTTCGCCCGAGTATCGTAA
AA sequence Show only first row Show all	>Lus10027276 pacid=23145466 polypeptide=Lus10027276 locus=Lus10027276.g ID=Lus10027276.BGIv1.0 annot-version=v1.0 MAAAASSSYLLCCFIAAIAVCLVTPSLVDGALEANLTAKLSVDASVRRTIPSTLFGIFFEEINHAGAGGLWAELVSNRGFEAGGANIPSNIDPWTTLRNK IALRLDVLCDVKSCPAGGVGVYNPGYWGMNIVKGKKYKLVLYVRSFDAIDVSVSLTGSSGALTLSTTSIKAFASDVSNWTKVEGLLEAKESDQSARLELR TSTKGVIWFDQVSLMPEDTYKGHGFRTELFEMLQEIKPRFLRFPGGCFVEGEWLRNAFRWKESIGPWEERPGHFGDVWMYWTDDGLGYYEFLQLAEDLDT LPIWVFNNGISHQDQVDTASILPFVQEALDGLEFALGDAGSKWGSVRAAMGHPAPFNLKYVAIGNEDCGKKNYRGNYLKFYEAIKRDYPGIQMISNCDGS VNPLDHPAEFYDFHVYTSASNLFSMSHQFDRTSRSGPKAFVSEYAVTGKDAGTGSLLAALAEAAFLIGVEKNSDIVEMASYAPLFVNTNDRRWNPDAIVF NASKAYGTPSYWMQRFFAESSGSYLLNSTLQTTSSSSLVASAISWQDSKDSSTYIRIKVVNFASSTVNLKISVSGLGVNSVGVSGSTKTVLTSANVMDEN SFQQTNKVAPTQSQLQNAGKDMDVQLSPNSITSFDLLTHSHSIRTRKAGPFARVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10027276 [exp]	0	1
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10038988 [exp]	1.0	0.9457
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	2.8	0.8780
AT1G27290			unknown protein		Lus10015767 [exp]	4.6	0.8557
AT2G01818			PLATZ transcription factor fam...		Lus10028998 [exp]	6.0	0.8649
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022077 [exp]	6.3	0.8399
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Lus10021101 [exp]	8.3	0.8673
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	10.2	0.8645
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002808 [exp]	10.4	0.8362
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	10.7	0.8117
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	11.7	0.8532

Compare expression of checked genes

Lus10027276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.