Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71870 241 / 9e-76 MATE efflux family protein (.1) AT5G19700 178 / 1e-51 MATE efflux family protein (.1) AT4G29140 171 / 9e-49 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT1G58340 168 / 6e-48 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT5G52050 159 / 7e-45 MATE efflux family protein (.1) AT5G49130 153 / 2e-42 MATE efflux family protein (.1) AT2G38510 151 / 9e-42 MATE efflux family protein (.1) AT4G23030 147 / 3e-40 MATE efflux family protein (.1) AT2G34360 92 / 2e-20 MATE efflux family protein (.1) AT1G23300 91 / 3e-20 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038987 [exp] 358 / 1e-121 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 185 / 8e-54 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10017836 [exp] 182 / 3e-53 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 166 / 7e-47 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10009788 [exp] 164 / 2e-46 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 162 / 2e-45 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025156 [exp] 150 / 5e-42 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10025237 [exp] 150 / 4e-41 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10028230 [exp] 105 / 4e-25 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G086100 [exp] 286 / 2e-93 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 273 / 3e-88 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 184 / 5e-54 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 181 / 7e-53 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 181 / 1e-52 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 178 / 2e-51 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 177 / 6e-51 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.007G043100 [exp] 163 / 6e-46 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 154 / 1e-42 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 99 / 7e-23 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10027277 pacid=23145586 polypeptide=Lus10027277 locus=Lus10027277.g ID=Lus10027277.BGIv1.0 annot-version=v1.0 ATGGCGGATGAACAAGCAGCAGCAGAAAGCTCCAAAGCACTCGACTTTCCTTCTCCTCACACATCACCCACTCTGTCTCAGATTTTACAAGAGCTAAAGG AGCTATGGACCATGGCGCTTCCAGTAACGGCGTCCCATCTAATGGCGTTCCTCAGAGCCGCCATATCAGTGGTCTTCCTCGGCCGGCTGGGAAGCCTTGA GCTGGCTGGAGGGGCGCTCTCAATCGGGTTCACAAACATAACCGGTTACTCGGTGATGGTCGGGTTGGCTTCTGGGTTGGAACCGGTTTGCAGCCAAGCA TACGGGAGCAAGAACTGGGACCTACTCAACCTGTCTTTACAGCGGATGGTTTTGATCCTCTGCGCCGCCGCCGCACCAATCAGCTTCCTATGGATCAACC TTCGGCCCATTATGGTGGGGAACGAGCTTGGAGCAGGGAACCCTCACAGGGCCAAGCTGGCAGCTATGGTGGCTTTGGGTTGTGCATTCATCATTGGCAT TTTCAACGTGCTATGGACAGTCTTGCTCAGGGAAAGATGGGCCGGTTTGTTCACTAAAGACGATCTCGTCAAGGCCTTTGTTGCTTCGGTCTTGCCGATC ATCGGTCTCTGCGAGCTCGGCAACTGCCCTCAGACGACCGGCTGCGGTGTCCTACGTGGCACTGCGAGGCCGGCGATAGCGGCCCGAATCAACTTGGGCT CGTTCTATTGCATTGGGACCCCGGTGGCTGTCGGGTTGGCATTCGGGTTGAAGCTGGGGTTCCCCGGGTTGTGGTTCGGGTTGTTGTCGGCCCAGGTTGC TTGCGCGGCTTCGATCCTGTATGTGGTTTGGGTTTGTACTGATTGGGAACATGAGGCTTTGAAGGCCCGGAAGCTGACCCAGATTGAGATGGGAAGTGGT AGTTGTATTGGGCCGAAAGAAGGCGATGAAGAAGGTAAAGGGCTTTTGATGGGAATGATCCGTGAATAA
AA sequence Show only first row Show all	>Lus10027277 pacid=23145586 polypeptide=Lus10027277 locus=Lus10027277.g ID=Lus10027277.BGIv1.0 annot-version=v1.0 MADEQAAAESSKALDFPSPHTSPTLSQILQELKELWTMALPVTASHLMAFLRAAISVVFLGRLGSLELAGGALSIGFTNITGYSVMVGLASGLEPVCSQA YGSKNWDLLNLSLQRMVLILCAAAAPISFLWINLRPIMVGNELGAGNPHRAKLAAMVALGCAFIIGIFNVLWTVLLRERWAGLFTKDDLVKAFVASVLPI IGLCELGNCPQTTGCGVLRGTARPAIAARINLGSFYCIGTPVAVGLAFGLKLGFPGLWFGLLSAQVACAASILYVVWVCTDWEHEALKARKLTQIEMGSG SCIGPKEGDEEGKGLLMGMIRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	0	1
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	1.4	0.7733
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015752 [exp]	3.3	0.6931
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	7.9	0.7030
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	9.1	0.7533
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	9.2	0.7170
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	13.6	0.7091
AT1G66510			AAR2 protein family (.1.2.3)		Lus10028528 [exp]	15.0	0.7317
AT2G02880			mucin-related (.1)		Lus10012838 [exp]	15.7	0.7522
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000852 [exp]	26.8	0.6632
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	29.4	0.6602

Compare expression of checked genes

Lus10027277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.