Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10230 775 / 0 AtLCY, LYC lycopene cyclase (.1.2) AT5G57030 260 / 1e-80 LUT2 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038986 [exp] 937 / 0 AT3G10230 831 / 0.0 lycopene cyclase (.1.2) Lus10013298 [exp] 464 / 6e-160 AT3G10230 508 / 3e-177 lycopene cyclase (.1.2) Lus10021576 [exp] 268 / 3e-83 AT5G57030 805 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10017156 [exp] 265 / 7e-78 AT5G57030 801 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Lus10005190 [exp] 156 / 2e-45 AT3G10230 159 / 3e-48 lycopene cyclase (.1.2) Lus10005189 [exp] 128 / 2e-35 AT3G10230 131 / 2e-38 lycopene cyclase (.1.2) Lus10000221 [exp] 109 / 1e-27 AT5G57030 251 / 9e-82 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043092 [exp] 824 / 0 AT3G10230 794 / 0.0 lycopene cyclase (.1.2) Potri.016G040200 [exp] 810 / 0 AT3G10230 770 / 0.0 lycopene cyclase (.1.2) Potri.009G159800 [exp] 508 / 1e-177 AT3G10230 538 / 0.0 lycopene cyclase (.1.2) Potri.004G197100 [exp] 496 / 6e-173 AT3G10230 533 / 0.0 lycopene cyclase (.1.2) Potri.006G147300 [exp] 254 / 7e-78 AT5G57030 723 / 0.0 LUTEIN DEFICIENT 2, Lycopene beta/epsilon cyclase protein (.1) Potri.001G229166 [exp] 143 / 1e-40 AT3G10230 137 / 7e-40 lycopene cyclase (.1.2) Potri.001G219250 [exp] 64 / 1e-12 AT3G10230 62 / 8e-13 lycopene cyclase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05834 [flax] [poplar] Lycopene_cycl Lycopene cyclase protein
Representative CDS sequence Show only first row Show all	>Lus10027278 pacid=23145559 polypeptide=Lus10027278 locus=Lus10027278.g ID=Lus10027278.BGIv1.0 annot-version=v1.0 ATGGATACCTTGCTCAAGGCACATAACAGGCTTGAATGGTTGCCTCAATTCCACGGCTGTTCAGAAATTCAGAGTAATTCAAACTCCTTCAGGATTCAAA CCCTGGATGCCGGGTTGTCTTCTAAGAAGTCTGGCTCAAAGAGAGGCAGAATTGTGGCTGTTAGGGCTACTAGTAGTAGTAGTAGTGCCCTTTTGGAGCT TGTGCCAGAAACTAAGAAGGAAAGTCTTGCATTTGAACTTCCCTTGTATGACCCTTCGAAAGGTCGTGTAGTCGACCTTGCTGTGGTGGGCGGTGGTCCG GCAGGGTTGGCCGTGGCACAACAAGTTTCGGAGGCAGGGCTTTCGGTTTGTTCGATCGATCCATCCCCTCAGTTGGTGTGGCCTAACAATTATGGTGTGT GGGTGGATGAGTTCGAGGCTATGGATTTGCTCGATTGCCTTGATACAACCTGGTCCGGTGCTGTTGTATACATTGACGAGAAATCGAAAAAGGATCTTGG TAGGCCTTACGGAAGGGTCAATAGGAAGCAACTCAAGTCCAAAATGCTGCAGAAATGCATCAAGAACGGTGTGTTGTTTCATCAAGCGAAAGTTGTCAAA GTTATCCACGAGGAGTCGAAATCTTTGTTGATATGTAACGATGGTGTTACGATCCAGGCTGCGGTGGTCCTTGATGCTACCGGTTTCTCCAGGTGCCTGG TTCAGTATGATAAGCCATATAATCCTGGTTACCAGGTAGCCTATGGAATTTTGGCAGAAGTGGAAGAACACCCGTTCGATGTAGATAAGATGTTGTTTAT GGATTGGAGAGATTCCCACCTTGATGGTAATGCTGAATTGAAAGAGAGGAATGGAAAGATCCCGACTTTTCTATATGCAATGCCTTTCTCTGAAGACAGG ATTTTCCTGGAAGAAACTTCATTAGTTGCTCGGCCTGGACTTCGAATGGAGGATATCCAGGAAAGAATGGTGGCTAGATTGAGGCACTTAGGCATCAAAG TTAAGAGCATTGAAGAGGATGAGCGCTGCGTTATACCGATGGGCGGTCCTCTTCCAGTACTTCCTCAAAGAGTCGTGGGAATCGGTGGAACGGCTGGAAT GGTGCACCCTTCGACCGGGTATATGGTGGCACGAACTCTAGCTGCAGCTCCGATTGTTGCAAATGCCATCGTCAGATTCCTCGGTTCTCATAAAGGAATT AACGGAGACGATTTGTCGACAGAAGTATGGAAAGACTTGTGGCCTATACAGAGGAGGAGACAGAGGGAGTTCTTCTGTTTCGGCATGGACATCTTGCTGA AGCTTGATTTGCCTGCAACAAGAAGGTTCTTCGATGCATTTTTCGACCTGGAACCGCATTACTGGCATGGGTTTCTGTCATCTAGGCTGTTCCTTCCAGA GCTTTTAACGTTTGGACTTGCACTGTTTGCTAATGCTTCTAATACTTCTAGGATAGAGATTATGTCCAAGGGAACCCTTCCTTTGGTTCAGATGATCAAT AACCTGGTTAAGGATACAGAATAG
AA sequence Show only first row Show all	>Lus10027278 pacid=23145559 polypeptide=Lus10027278 locus=Lus10027278.g ID=Lus10027278.BGIv1.0 annot-version=v1.0 MDTLLKAHNRLEWLPQFHGCSEIQSNSNSFRIQTLDAGLSSKKSGSKRGRIVAVRATSSSSSALLELVPETKKESLAFELPLYDPSKGRVVDLAVVGGGP AGLAVAQQVSEAGLSVCSIDPSPQLVWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYIDEKSKKDLGRPYGRVNRKQLKSKMLQKCIKNGVLFHQAKVVK VIHEESKSLLICNDGVTIQAAVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMLFMDWRDSHLDGNAELKERNGKIPTFLYAMPFSEDR IFLEETSLVARPGLRMEDIQERMVARLRHLGIKVKSIEEDERCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRFLGSHKGI NGDDLSTEVWKDLWPIQRRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPHYWHGFLSSRLFLPELLTFGLALFANASNTSRIEIMSKGTLPLVQMIN NLVKDTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10027278 [exp]	0	1
AT3G25480			Rhodanese/Cell cycle control p...		Lus10005853 [exp]	2.0	0.9385
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	2.4	0.9320
AT1G56180			unknown protein		Lus10006532 [exp]	4.5	0.9275
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	5.5	0.9193
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	5.7	0.9292
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	6.3	0.9203
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031710 [exp]	6.6	0.9180
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	8.7	0.9251
AT2G04360			unknown protein		Lus10016086 [exp]	9.2	0.9173
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10010340 [exp]	9.2	0.9162

Compare expression of checked genes

Lus10027278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.