Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56710 45 / 2e-06 SIB1 sigma factor binding protein 1 (.1) AT2G41180 43 / 2e-05 SIB2 sigma factor binding protein 2, VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038985 [exp] 202 / 9e-67 AT3G56710 54 / 3e-09 sigma factor binding protein 1 (.1) Lus10024139 [exp] 47 / 8e-07 AT3G56710 58 / 5e-11 sigma factor binding protein 1 (.1) Lus10039494 [exp] 47 / 9e-07 AT3G56710 56 / 3e-10 sigma factor binding protein 1 (.1) Lus10039493 [exp] 46 / 3e-06 AT3G56710 54 / 1e-09 sigma factor binding protein 1 (.1) Lus10026165 [exp] 43 / 2e-05 AT3G56710 44 / 3e-06 sigma factor binding protein 1 (.1) Lus10008659 [exp] 41 / 7e-05 ND 44 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G038900 [exp] 57 / 1e-10 AT2G41180 56 / 2e-10 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G036600 [exp] 57 / 2e-10 AT3G56710 48 / 2e-07 sigma factor binding protein 1 (.1) Potri.001G029700 [exp] 53 / 5e-09 AT3G56710 54 / 5e-10 sigma factor binding protein 1 (.1) Potri.003G194700 [exp] 51 / 2e-08 AT3G56710 54 / 6e-10 sigma factor binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10027279 pacid=23145520 polypeptide=Lus10027279 locus=Lus10027279.g ID=Lus10027279.BGIv1.0 annot-version=v1.0 ATGATTCAGATGGAAACCCTGCTAATGGATAAGAAGGGCGGCAAGAAGAAGAAGATAATGAAAAGAGCTGGATCATCATCAAGCAGCAGCTGCAGAAAGG AAGAAGCGATGAAAGTGGTGTACATCTCCAACCCAATGAAGTTCCAGATCCGCGCCTCTGAATTCCGCTCCCTCGTTCAGCAACTCACCGGACAATACGC CGACTACCCTTCTCTTCATCATCACTACTCACCGCCACCACCTGCCTCCTCCAACTCTTCCTCCTGCAATGATGTTACTAATTGTAATTCTGTCGGTGGG GAATTTCATCGAACAGTTGGTGAGCATAATTATCCGCTGCTGTTTACTCCCGATCAAACCTCCGCGGCTGAAAGCGACGTCGACCAAGCTGTGGAAGTTG TGCAGCAGACTAATTACGGATCATCGTCATGTGCTGGAAACGACGATGACGAGGATGATGACGATGAGGTGCCGGCTGTGGTCCAAGAGGACGACGTTTT CGTGCCGGAGATGTTGGAGAATTCTACCCTGTTTTATTCTTGGCATTTGGATATGATTAGTAGCTAG
AA sequence Show only first row Show all	>Lus10027279 pacid=23145520 polypeptide=Lus10027279 locus=Lus10027279.g ID=Lus10027279.BGIv1.0 annot-version=v1.0 MIQMETLLMDKKGGKKKKIMKRAGSSSSSSCRKEEAMKVVYISNPMKFQIRASEFRSLVQQLTGQYADYPSLHHHYSPPPPASSNSSSCNDVTNCNSVGG EFHRTVGEHNYPLLFTPDQTSAAESDVDQAVEVVQQTNYGSSSCAGNDDDEDDDDEVPAVVQEDDVFVPEMLENSTLFYSWHLDMISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10027279 [exp]	0	1
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	1.7	0.9170
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	2.8	0.8812
AT1G75210			HAD-superfamily hydrolase, sub...		Lus10032712 [exp]	6.9	0.8829
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	7.2	0.8911
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	8.4	0.8883
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	8.8	0.8644
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	11.0	0.8935
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10036698 [exp]	11.2	0.8812
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	11.5	0.8513
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	11.5	0.8388

Compare expression of checked genes

Lus10027279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.