Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56720 77 / 3e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038984 [exp] 743 / 0 AT3G56720 129 / 7e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039900 [exp] 259 / 6e-81 AT3G56720 129 / 3e-33 unknown protein Potri.016G036000 [exp] 234 / 2e-71 AT3G56720 124 / 3e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027280 pacid=23145503 polypeptide=Lus10027280 locus=Lus10027280.g ID=Lus10027280.BGIv1.0 annot-version=v1.0 ATGGACTCTAAGCAACAGTCTTCTCCACTTGATACTGCTGAGACAAAAGCAACTTTCCGCAGGCCTTCAAATGATCTTGCTGGCAGAAAATATAGACGGC GTTCTCCTGATAATCAGTCACCGGAACACCCTGATAGTGCCAAGAATTATCAAAGGTCCAGTCCTATCTTTTCTAGGGGAGAGCCTGCTAAAGTATCTGA GCAAAGAGACCAAAGGAAGGATCAAGAAAGAAAATATGACAGGGATCAGCTTGTAAAAGGTAGAGATTCTTATAAACAAGTTGATGGCCGCCCACCTAAG AATCCTCATCCTTACTCAAAGCATGATGACTACAGAAAAGTTGAGAAGTATGCAGATGAAGAACAACGCAATCTGAAAAGGGAGTCAAGTGGTACAGCTC GCCCTGATCGTGTGAGATCAGACTGTGATAATGGTCGGTCAAGGGATTTCAGTAGGAATGCAGAAAAATACTCCCGTGATAGGGACACTTCAAGAAGTAA GGAGAAAGAATCATATTCTGATGATCGTCATAAATACAAAGATAAGCACATGTCACCTGATAGACATGTATCGAAGAAAGCAACTAATTCAAATTATGAG GACCTGGACTCGGACCGTCACAGAGGAGGCCGCAATCGAGATGAGGGAAGAGCTTACCGCAGAAACTCTGATTACAAAAGTGATGGTACGGATTATTGCG AAGAAGCAAGGGGATTTGTTAAAGAGTCCAGCTCTTCTAGAAGGGACAGCGAGAAGTACCGCTCTCGAGAATCACACAAAAGCAATCCCTCGGAAATCGA GAGTGGAAGAGAAAAGAAATGCGATGATTTTGAAACCAACAGAGACAAGCATACGAACTCCAGAGCAGCAGGACATGATGATGAAAAATCTGTTCGTGTG AGTGAATCTCAGCAATCCGAGGCCAAAAGGCCAAAGCTCTTTGGTTCAGATCATAATGTTGGCCAGAGCCGAGATGGTGAAAACCAGTCTTCAAGCCCAA AACAGATCACATCTGCTGGTAACGTTGCTGTAGGAAATTCTTCTGAAGTTACCAATGATCTAAATGCAGCAAAGGTTGCTGCCAAGAAAGCTGCTGAATT AGTGAATAAAAACCTTGTGGGCGGGAGCTTTATGTCTACTGAACAGAAGAAGAAACTGCTATGGGGTAGCAAGAAGAGCACCACCACCACCACTGCAGTA GAGCCCTCTGGTCATCGGTGGGACACTACGCTGTTTGGCGATCGTGAAAGGCAAGAGAAATTCAACAAACTCATGGGTGTGAAGGGGGACGGGAAGGTGG AAACGAAGACCAGCAGCAAAACAGAAGGCGGCAGGCATCTCTTAGCCGAAAAGCAGGAGCAGCTCCAAGTCGAGTTAGAGAAGCAGTACACAGCCGGGCT TCGAAGGAGAGACGGCCGTACAGTTGGATTGGGGCTCTGA
AA sequence Show only first row Show all	>Lus10027280 pacid=23145503 polypeptide=Lus10027280 locus=Lus10027280.g ID=Lus10027280.BGIv1.0 annot-version=v1.0 MDSKQQSSPLDTAETKATFRRPSNDLAGRKYRRRSPDNQSPEHPDSAKNYQRSSPIFSRGEPAKVSEQRDQRKDQERKYDRDQLVKGRDSYKQVDGRPPK NPHPYSKHDDYRKVEKYADEEQRNLKRESSGTARPDRVRSDCDNGRSRDFSRNAEKYSRDRDTSRSKEKESYSDDRHKYKDKHMSPDRHVSKKATNSNYE DLDSDRHRGGRNRDEGRAYRRNSDYKSDGTDYCEEARGFVKESSSSRRDSEKYRSRESHKSNPSEIESGREKKCDDFETNRDKHTNSRAAGHDDEKSVRV SESQQSEAKRPKLFGSDHNVGQSRDGENQSSSPKQITSAGNVAVGNSSEVTNDLNAAKVAAKKAAELVNKNLVGGSFMSTEQKKKLLWGSKKSTTTTTAV EPSGHRWDTTLFGDRERQEKFNKLMGVKGDGKVETKTSSKTEGGRHLLAEKQEQLQVELEKQYTAGLRRRDGRTVGLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56720			unknown protein		Lus10027280 [exp]	0	1
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10013477 [exp]	2.2	0.7799
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	2.6	0.7197
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	7.1	0.7514
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	9.7	0.7739
AT1G51940			protein kinase family protein ...		Lus10027677 [exp]	13.7	0.6798
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10005193 [exp]	21.6	0.7062
AT2G16940			Splicing factor, CC1-like (.1....		Lus10027830 [exp]	22.8	0.7122
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	25.3	0.6358
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	28.0	0.6951
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	31.3	0.7114

Compare expression of checked genes

Lus10027280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.