Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05080 224 / 2e-72 ATUBC22, UBC22 ubiquitin-conjugating enzyme 22 (.1.2) AT1G78870 79 / 1e-17 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT1G16890 78 / 2e-17 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT2G02760 77 / 7e-17 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G14400 76 / 1e-16 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT4G27960 74 / 1e-15 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G50870 74 / 2e-15 UBC27 ubiquitin-conjugating enzyme 27 (.1.2) AT1G64230 72 / 4e-15 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 72 / 5e-15 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G62540 71 / 6e-15 UBC3 ubiquitin-conjugating enzyme 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038982 [exp] 301 / 1e-100 AT5G05080 310 / 1e-105 ubiquitin-conjugating enzyme 22 (.1.2) Lus10012110 [exp] 227 / 2e-73 AT5G05080 260 / 5e-88 ubiquitin-conjugating enzyme 22 (.1.2) Lus10010433 [exp] 224 / 3e-72 AT5G05080 253 / 6e-85 ubiquitin-conjugating enzyme 22 (.1.2) Lus10017654 [exp] 81 / 2e-18 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 81 / 2e-18 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10037203 [exp] 79 / 9e-18 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10036727 [exp] 79 / 9e-18 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10000353 [exp] 83 / 3e-17 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10030786 [exp] 77 / 7e-17 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G026900 [exp] 253 / 4e-83 AT5G05080 376 / 4e-133 ubiquitin-conjugating enzyme 22 (.1.2) Potri.016G024800 [exp] 236 / 1e-76 AT5G05080 372 / 1e-131 ubiquitin-conjugating enzyme 22 (.1.2) Potri.013G064400 [exp] 79 / 9e-18 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.001G392500 [exp] 79 / 9e-18 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.011G111400 [exp] 78 / 3e-17 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.019G039200 [exp] 77 / 9e-17 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G064000 [exp] 76 / 1e-16 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G103400 [exp] 76 / 5e-16 AT5G50870 338 / 4e-120 ubiquitin-conjugating enzyme 27 (.1.2) Potri.006G110200 [exp] 72 / 3e-15 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 72 / 3e-15 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10027282 pacid=23145518 polypeptide=Lus10027282 locus=Lus10027282.g ID=Lus10027282.BGIv1.0 annot-version=v1.0 ATGGGTGGAGACGAGGTGGTGACGGTGGGAGGGGTCATCGTCGTTCCAACTGCGGTGGCAGTGAGAGGGGTCATCATCGTTCCAGCGGCGGTGGCGGTGG GAGGGGTCATTATCGTTCCAGCGGCGGTGGCAAGGGTAACTCTTGTGGAGAGGCCGTTATTGACTGCGATGATGGTGTTGGTGATGGAGATAGCAGTGAT GGAGACGAAGACGGTGGTATTGGCGGTGGAGTCATGGCTCGAAATTGCCGATGATTGCCGACTCTCCGCGACAAATGAAAATCTGCCACCCAAAGTGATA AAGCAACTTGCTAAGGAATTGAAGAGCCTGGATGAATCTCCACCGGAAGATGGGACTCCATACGAAAATTGCATTTTTCGAATGAAGCTGTTATTGCCAC ATGACTTTCCACGGCTACCTCCCCAAGGTTTCTTCTTAACCAAGATATTTCACCCGAACATTTCTACTGATGGATGTATCTGTGTCAATGCACTAAAAAA GGACTGGAGTCCAAGCCTTGGACTGCGACATGTTCTTGTTGTCGTTAGGTGCTTATTGATTGAACCATTCCCTGAATCTGCCCTTAACGAGCAGGCTGCA AAGATGCTGCTAGAAAATTATGAGGATTACTTCGAGCATGCCAGATTGATCTCTGAAATTTATGCAAAGCCAAAACCCAAGTTCAAGTCCGGAGCCATTT CGGAGTCAACTACTGCACTGAATGTGGACCAGAGCAACACCTCAGTTGATCACAAGAACACAGCAGCTGGTGCTGCTGTGCCATCGGCCTTAGCACCTTG TTCAGCCACCTCTAAGGGAGGGAACCCCGTGGATCATCAGGTAAGTGGTTCGGCAGTAACAGCCGAGTCGGGAGGTGGTACGGCAGCTGTTGTCGTTACG AGTTCTGCAAAACCAGCGGCCAGGAAGGAGGTTGCTGCTGCCGGACAGGTGAAAGCTGCGGTGGACAAGAAGAAGATGGATGCGAGGAAGAAGAGCTTGA AGAGACTATAA
AA sequence Show only first row Show all	>Lus10027282 pacid=23145518 polypeptide=Lus10027282 locus=Lus10027282.g ID=Lus10027282.BGIv1.0 annot-version=v1.0 MGGDEVVTVGGVIVVPTAVAVRGVIIVPAAVAVGGVIIVPAAVARVTLVERPLLTAMMVLVMEIAVMETKTVVLAVESWLEIADDCRLSATNENLPPKVI KQLAKELKSLDESPPEDGTPYENCIFRMKLLLPHDFPRLPPQGFFLTKIFHPNISTDGCICVNALKKDWSPSLGLRHVLVVVRCLLIEPFPESALNEQAA KMLLENYEDYFEHARLISEIYAKPKPKFKSGAISESTTALNVDQSNTSVDHKNTAAGAAVPSALAPCSATSKGGNPVDHQVSGSAVTAESGGGTAAVVVT SSAKPAARKEVAAAGQVKAAVDKKKMDARKKSLKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10027282 [exp]	0	1
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	4.9	0.8479
AT1G31335			unknown protein		Lus10038328 [exp]	8.9	0.8524
AT4G35150			O-methyltransferase family pro...		Lus10025440 [exp]	13.3	0.7964
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	15.5	0.8287
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	15.9	0.8352
AT5G49170			unknown protein		Lus10024954 [exp]	16.6	0.8332
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10025920 [exp]	19.1	0.7860
AT5G25590			Protein of unknown function (D...		Lus10002864 [exp]	22.2	0.7944
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	25.3	0.7846
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10006685 [exp]	25.4	0.8004

Compare expression of checked genes

Lus10027282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.