Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 66 / 3e-12 B3 Domain of unknown function (DUF313) (.1) AT2G32645 57 / 2e-09 Domain of unknown function (DUF313) (.1) AT2G31420 56 / 4e-09 B3 Domain of unknown function (DUF313) (.1) AT1G05920 55 / 2e-08 B3 Domain of unknown function (DUF313) (.1) AT5G24050 43 / 0.0002 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038980 [exp] 466 / 7e-166 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 356 / 3e-124 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10009354 [exp] 191 / 2e-60 AT2G31420 57 / 2e-10 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 139 / 5e-38 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 132 / 1e-35 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 117 / 2e-31 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10035394 [exp] 114 / 2e-30 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 93 / 4e-21 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10015934 [exp] 89 / 5e-20 AT2G27410 48 / 3e-06 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014200 [exp] 63 / 4e-11 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.015G014700 [exp] 61 / 2e-10 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.013G065401 [exp] 59 / 4e-10 AT2G24670 51 / 5e-08 Domain of unknown function (DUF313) (.1) Potri.013G031600 [exp] 60 / 8e-10 AT2G27410 59 / 2e-09 Domain of unknown function (DUF313) (.1) Potri.011G139000 [exp] 56 / 9e-09 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 53 / 1e-07 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10027284 pacid=23145582 polypeptide=Lus10027284 locus=Lus10027284.g ID=Lus10027284.BGIv1.0 annot-version=v1.0 ATGGCGATGAGTGCTCTTCAAGACGGAGGATCAAACTGGTACAATTTGAAGTTGTTAGCTGACTGCGCTATGTTCATCGGAGAATGCAGTGATTACGATT CTTTCTGCAGTCACTCTGATCCGCACAGTTGCTTTCTCACCGTCTCAAAGGCAAAAACCCGCAAAAGGAAGGCTGCTGCTTCTTCTATGCAGTTCTGCAA CATCCCCAGGAGAAAAAGGACCAAGCTTGCTCATCTATCTCCATCCGCCGGTATCTTTCCGTCCTTCAATTCGGTCAACTCTGTTTCTCCTCCTTCAAAG ACAACCATTACTCTGTTTCCGTTTCCACCAGATCAGAAGCCAATTCTTGCGCCGCCGATCACCACCGTCGTCGCCTCCTCCTCTAAACGTCGACGACCAC CACTCCGAGCGGGAGCAGATTCCGTGTCGTCTTTTCCATCGAGTCTGAGGGCTAGGGTTTCTGCAGCTGTGGGGGAAAGCGTTGAAAGCGAGTTTACTAT GGTGGTTCAGAAGAAATTAACCGCGACAGATCTTACAATGCACAATTGCCGTCTTTCCATCCCGACGAAGAAGATTGCGAACGAGTATTTGACGGCTGCA GAGAATAGGGAACTGGACACGGCTAGGCATACCAAGATTGGGTGTTTTGTAGATCCGGATATGGAGGTTTCGTATCAAGTGTCGTTGAGAAGGTGGGCGA TGGAGAGCACCTACATCGACAACATCATCGGAGGAGGATGGAAGAATGTCCTGATGAAGCAACGGCGCAACCTTATTGATCTTACTGAGAACGATGTGGT GGAGCTCTGGAGTTTCAGGTCCCGTTCAGGAGAGCTGTGTTTTCTACTGGTTACTTTGGAAGCAAGACAAGCAGCAGCAGCTGCTGACAAGGAACAGCAA GGATTAATGATGATCGAATATAGAGCAAGTCCAGCGACAACCAGCGCTGTTACTCGGGAAGAAGGAAGCCCTCTTCAGACTGTGTCTACCGGCTGCTGTC CTGATATTGATTTGACTCTTAGACTGTAA
AA sequence Show only first row Show all	>Lus10027284 pacid=23145582 polypeptide=Lus10027284 locus=Lus10027284.g ID=Lus10027284.BGIv1.0 annot-version=v1.0 MAMSALQDGGSNWYNLKLLADCAMFIGECSDYDSFCSHSDPHSCFLTVSKAKTRKRKAAASSMQFCNIPRRKRTKLAHLSPSAGIFPSFNSVNSVSPPSK TTITLFPFPPDQKPILAPPITTVVASSSKRRRPPLRAGADSVSSFPSSLRARVSAAVGESVESEFTMVVQKKLTATDLTMHNCRLSIPTKKIANEYLTAA ENRELDTARHTKIGCFVDPDMEVSYQVSLRRWAMESTYIDNIIGGGWKNVLMKQRRNLIDLTENDVVELWSFRSRSGELCFLLVTLEARQAAAAADKEQQ GLMMIEYRASPATTSAVTREEGSPLQTVSTGCCPDIDLTLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	1.0	0.9952
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	2.8	0.9896
					Lus10013654 [exp]	3.0	0.9717
AT5G48140			Pectin lyase-like superfamily ...		Lus10013780 [exp]	3.5	0.9676
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	3.5	0.9885
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	4.5	0.9880
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10012743 [exp]	5.0	0.9543
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	5.1	0.9669
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	5.5	0.9858
					Lus10015828 [exp]	6.5	0.9848

Compare expression of checked genes

Lus10027284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.