Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41020 400 / 4e-136 WW domain-containing protein (.1.2) AT3G01540 45 / 0.0001 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038992 [exp] 845 / 0 AT2G41020 427 / 7e-147 WW domain-containing protein (.1.2) Lus10033770 [exp] 43 / 0.0005 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10006142 [exp] 43 / 0.0006 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G032200 [exp] 542 / 0 AT2G41020 410 / 2e-140 WW domain-containing protein (.1.2) Potri.010G170400 [exp] 45 / 0.0001 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1) Potri.017G071400 [exp] 43 / 0.0005 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain
Representative CDS sequence Show only first row Show all	>Lus10027285 pacid=23145410 polypeptide=Lus10027285 locus=Lus10027285.g ID=Lus10027285.BGIv1.0 annot-version=v1.0 ATGGGCGAGGAGTTGGCTGCAGAGAAGGGTAATCAAGTCCTTCAAGTCTCCTTCAATGCCGCTGAAACCGAGATTGAATCTGCTGCTCGGGAGGCGGTGC TCCGTGAGCAAGAAATTGAGGCACAAAGAGTCATTCAAGCTCACAGAGATACAGGAGTTACAGCTGAATCATCCAAGGATGGTGCTGACATTTTTGCTCA ACGCCTTGATCCCAATGCCCTAAAAGAACATCTGTTGAAGATGACCTCTGACCATCGTGCTGAAATGGCTTCAAAGCATGGGAAGCCTGGAGTTTCTGAA CAAGATCATATGGAGATAGGGAATGGGTATGGTGTACCTGGTGGAGGGGCATATTATGGTTCGTCAAGGCCAGGATTTGATTATGAATCTAAACAGGAAT CCGCAGCAAAGGAGCTCCCTGAGGGTCTTAAACAGAGGTTAATGGCAAGAGGTGTTTTGAAAGACAAGAAAGAGAAAGAACATCAGTTGGCAACTTATCA AAGTGAATCGAGGACCGTTTCAACACAGCATGTTGAGATGAAAACGCTGCTTCCTGGCTGGGCAGAAGCAAAAGATCCCACCACTGGTGTTTCTTATTAC TATAACGAAACCACTGGAATGAGCCAATGGGAGAGGCCTGTGGAAACACCTATAACCAAGCAGGCTCCTTTACCTTTCATTCTTCCTGTGGAAACATCTA TAACGAAGCAGGCTCCTTCACCTTTCGCTCTTCCTGAAAACTGGGTGGAGGCAATGGATGAAACAACAGGGCACAAATATTACTTCAATACAAAAACCAA TATATCACAATGGGAGCATCCTAATTCATCTTCTTTTGCTCCACGGCATGCTCCCACCACTGCCACGGTTAATGCTGTTGCAGGAACATTAAGCAATCTG TCAGCTTATCAGACAAGATGCGCTGAATGTGGTGGTTGGGGGGTGGGCCTTGTGCAATCATGGGGTTACTGCAAACATTGTACCCGAGTTCTTAACCTTC CACAGAGCCAGTACATAACTCCAAACTACCAGCAGCAGACTATCAATGTTGGGATTTCTAACGGAAATCATAATAAGGGTGCAGAAAAGAGGCCAAATGG AAGACCTCCTATGGGTAAAGGAAACAAAAAAGAGAGCAAAAAACGTTCTCATGCCGAGGACGATGAGCTAGATCCCATGGATCCAAGCGCTTATTCAGAT GCTCCTCGTGGCGGCTGGGTTGTGGGCTTAAAAGGCATGCAGCCACGAGCAGCTGATACGACTGCCACGGGTCCTCTTTTCCAGCAACGCCCTTATCCAT CACCTGGAGCCGTGTTGCGGAAGAATGCAGAGGCTTCATCGCAATCGAAGAAACCGGGCTCTCAGTACGCTCCCATATCGAAGAAAGGCGATGGTAGTGA CGGTCTGGGTCAGGCTGATTGA
AA sequence Show only first row Show all	>Lus10027285 pacid=23145410 polypeptide=Lus10027285 locus=Lus10027285.g ID=Lus10027285.BGIv1.0 annot-version=v1.0 MGEELAAEKGNQVLQVSFNAAETEIESAAREAVLREQEIEAQRVIQAHRDTGVTAESSKDGADIFAQRLDPNALKEHLLKMTSDHRAEMASKHGKPGVSE QDHMEIGNGYGVPGGGAYYGSSRPGFDYESKQESAAKELPEGLKQRLMARGVLKDKKEKEHQLATYQSESRTVSTQHVEMKTLLPGWAEAKDPTTGVSYY YNETTGMSQWERPVETPITKQAPLPFILPVETSITKQAPSPFALPENWVEAMDETTGHKYYFNTKTNISQWEHPNSSSFAPRHAPTTATVNAVAGTLSNL SAYQTRCAECGGWGVGLVQSWGYCKHCTRVLNLPQSQYITPNYQQQTINVGISNGNHNKGAEKRPNGRPPMGKGNKKESKKRSHAEDDELDPMDPSAYSD APRGGWVVGLKGMQPRAADTTATGPLFQQRPYPSPGAVLRKNAEASSQSKKPGSQYAPISKKGDGSDGLGQAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	0	1
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	1.0	0.8290
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	5.3	0.7765
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	7.5	0.7656
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	10.4	0.7560
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	11.5	0.7669
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10033033 [exp]	11.5	0.7357
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	12.5	0.6947
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10038886 [exp]	12.6	0.7478
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	22.1	0.7016
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	22.2	0.7247

Compare expression of checked genes

Lus10027285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.