Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27410 63 / 4e-11 B3 Domain of unknown function (DUF313) (.1) AT2G31420 61 / 2e-10 B3 Domain of unknown function (DUF313) (.1) AT2G32645 55 / 1e-08 Domain of unknown function (DUF313) (.1) AT3G24850 49 / 3e-06 B3 Domain of unknown function (DUF313) (.1) AT2G24670 48 / 4e-06 B3 Domain of unknown function (DUF313) (.1) AT1G32030 48 / 7e-06 B3 Domain of unknown function (DUF313) (.1) AT1G05920 47 / 8e-06 B3 Domain of unknown function (DUF313) (.1) AT3G49610 47 / 1e-05 B3 Domain of unknown function (DUF313) (.1) AT1G05930 47 / 1e-05 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027287 [exp] 112 / 2e-29 AT2G31420 47 / 1e-06 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 101 / 5e-24 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 96 / 3e-22 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 94 / 1e-21 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 92 / 1e-20 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 86 / 2e-19 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10035394 [exp] 72 / 6e-15 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 71 / 2e-14 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10038802 [exp] 54 / 6e-08 AT3G24850 69 / 1e-13 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014700 [exp] 59 / 1e-09 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 59 / 2e-09 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1) Potri.015G014200 [exp] 58 / 2e-09 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1) Potri.011G139000 [exp] 49 / 2e-06 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1) Potri.013G065401 [exp] 45 / 1e-05 AT2G24670 51 / 5e-08 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10027286 pacid=23145571 polypeptide=Lus10027286 locus=Lus10027286.g ID=Lus10027286.BGIv1.0 annot-version=v1.0 ATGCTGATCATTCTCAAGACGACGAAGAAGGCGACTTCCGCCTCCGCCGGAGAAGAGGAAGGCCGCCACACGGAACAAGAAGCAAAAACACTGCGCCACC GCCGCCATTCCGACGACAAGAACAATTTCGCCGCTTGGAATTCTTTGGTGGATGTAGTCGAAATCGTAAGCGGCTGCGTGGAGGAGAAGGAGAGCGTAAT TTGCAGCCACAAAGACGTCCGAGATTGCTGCGACGCTTTCTGCCGCCGCCGCCGCCGTCAATCCCCTGTTCCCTCCGCCGCCGCTCTGAAACTGAAACTC CGCAGCAGAAACTACAACAACAGCTCACAAAATCAACAACAAGGGAAAGAATTCCGAGCTCCTCCGCACCGTATCACGATCCGTACCACCGGCGGCAGCA GCAGTAGCAGCTCCCACCGCCCACGTTTCAAGAATCAAGAACCTGAAGCTTTCAACTTCTCAATTCTCAGTTCCAAACTACCACAAGGTTCAAAATTTAA TCCTCCCCGTACCAGCTGTTTCAATTTGGAGAAGAACCCATGTCCCAGAAACTCGAATATTCCTCACCCTGAAATAGAGCCGCCGTACAACATGAGGCAG AGGATATCCGAAGCGACAATGGGGAGAGTCGTGGGAAGAGAATTCAAGCTCGCTATACGTAAGGAGCTGACCGACACCGATCTGAGAGCGCACAATGCCA GGCTGTCGATGCCGAACGGGAAGATCATCGACGGAGGGTACCTGACCGAGGAAGAGAAGAGGATACTATACGAGAAGAACGAGAGATTGGAAATCAAAAC ATTGGTATTGGTAATGGGGAAGAATCAGAGCGGACACGTGGAAGAAGCTGGGAACAGAATTGCTCTGAAGAAGTGGAATATGCAGAGCTGTGGAGTCTGT AATCTGAACGGGCCGAGCTGGAGGGAGGTGGCGGTGATGTGCGAAGAAGGGAGGTTGGATTTGAAAGCTGGAGATGAAGTTGAGGTATGGGGGTTTCGAG TTGGTTCTGGGAAGCTCTGTTTTGCTCTGGTTAATACTGATGCAAGGCTGGGTTAG
AA sequence Show only first row Show all	>Lus10027286 pacid=23145571 polypeptide=Lus10027286 locus=Lus10027286.g ID=Lus10027286.BGIv1.0 annot-version=v1.0 MLIILKTTKKATSASAGEEEGRHTEQEAKTLRHRRHSDDKNNFAAWNSLVDVVEIVSGCVEEKESVICSHKDVRDCCDAFCRRRRRQSPVPSAAALKLKL RSRNYNNSSQNQQQGKEFRAPPHRITIRTTGGSSSSSSHRPRFKNQEPEAFNFSILSSKLPQGSKFNPPRTSCFNLEKNPCPRNSNIPHPEIEPPYNMRQ RISEATMGRVVGREFKLAIRKELTDTDLRAHNARLSMPNGKIIDGGYLTEEEKRILYEKNERLEIKTLVLVMGKNQSGHVEEAGNRIALKKWNMQSCGVC NLNGPSWREVAVMCEEGRLDLKAGDEVEVWGFRVGSGKLCFALVNTDARLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	1.0	0.9729
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10019728 [exp]	5.9	0.9184
AT1G31720			Protein of unknown function (D...		Lus10034746 [exp]	7.5	0.9296
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10020272 [exp]	8.7	0.9237
					Lus10030774 [exp]	9.2	0.9461
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10026094 [exp]	9.2	0.9498
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005358 [exp]	9.6	0.9505
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008614 [exp]	12.0	0.9302
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10021206 [exp]	12.3	0.8962
AT2G15220			Plant basic secretory protein ...		Lus10019804 [exp]	13.7	0.9026

Compare expression of checked genes

Lus10027286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.