Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05930 45 / 6e-06 B3 Domain of unknown function (DUF313) (.1) AT3G24850 44 / 2e-05 B3 Domain of unknown function (DUF313) (.1) AT2G27410 42 / 7e-05 B3 Domain of unknown function (DUF313) (.1) AT2G32645 41 / 0.0001 Domain of unknown function (DUF313) (.1) AT2G24670 40 / 0.0002 B3 Domain of unknown function (DUF313) (.1) AT1G05920 39 / 0.001 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027286 [exp] 110 / 2e-29 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 86 / 4e-20 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 77 / 1e-16 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 69 / 1e-14 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 70 / 2e-14 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 69 / 5e-14 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 56 / 6e-10 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10035394 [exp] 52 / 1e-08 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1) Lus10009354 [exp] 50 / 3e-08 AT2G31420 57 / 2e-10 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014700 [exp] 41 / 0.0002 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.015G014200 [exp] 40 / 0.0003 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10027287 pacid=23145460 polypeptide=Lus10027287 locus=Lus10027287.g ID=Lus10027287.BGIv1.0 annot-version=v1.0 ATGAGCGATTTGAGCCAGAGGATATTCAGAGCGACGGCGGGGGAGGTAGCGGGCGCAGATTTCACGATGGTGATGCGCAAGCAACTGACGGAGACCGATC TGAGCAGCGGCCGGCTTGTGATGCCGGACGGGAAGTTTCTAGACGTGGAGTTTCTGAGCGGGGAAGAGAAGAGGAGATTGAAGGAGGACTGGGAGCTGAA AGTTGCGGAGTTTATTGTAATGGGGAAGGATCCTGATTCGACGGCGCACCGAATCAGGGAGGATGTAAAATTCTTGAAGTGGAGGACGGGGAAGAACCGC AATGTGTATAATCTCGCCGGTCCGGGTTGGAAATCGGTGATCAAGATGAAGGAAGATGGAGCTGTGGATTTCAGACAAGGCGATGAAATTGAGGTTTGGG CGTTTAGGTCGTCGACGAACTCCGAGTTCTGTTTTGCTCTGGTTAATGCTGCCGGCCGGCCGGAAAAAATTGAAAAAAAATCTGGAGGGTTTATTTACCG TGGCGAGGAGGCAATTGTGCTAAAAAGATTATGA
AA sequence Show only first row Show all	>Lus10027287 pacid=23145460 polypeptide=Lus10027287 locus=Lus10027287.g ID=Lus10027287.BGIv1.0 annot-version=v1.0 MSDLSQRIFRATAGEVAGADFTMVMRKQLTETDLSSGRLVMPDGKFLDVEFLSGEEKRRLKEDWELKVAEFIVMGKDPDSTAHRIREDVKFLKWRTGKNR NVYNLAGPGWKSVIKMKEDGAVDFRQGDEIEVWAFRSSTNSEFCFALVNAAGRPEKIEKKSGGFIYRGEEAIVLKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31420	B3		Domain of unknown function (DU...		Lus10027287 [exp]	0	1
AT3G12000			S-locus related protein SLR1, ...		Lus10003420 [exp]	3.5	0.7084
AT3G18570			Oleosin family protein (.1)		Lus10042957 [exp]	14.8	0.6591
AT2G33320			Calcium-dependent lipid-bindin...		Lus10003570 [exp]	72.1	0.5778
AT1G71530			Protein kinase superfamily pro...		Lus10009464 [exp]	187.8	0.5567
AT5G03620			Subtilisin-like serine endopep...		Lus10035599 [exp]	211.3	0.5546

Compare expression of checked genes

Lus10027287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.