Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56640 1183 / 0 SEC15A exocyst complex component sec15A (.1) AT4G02350 737 / 0 SEC15B exocyst complex component sec15B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038993 [exp] 1553 / 0 AT3G56640 1216 / 0.0 exocyst complex component sec15A (.1) Lus10010439 [exp] 1342 / 0 AT3G56640 1202 / 0.0 exocyst complex component sec15A (.1) Lus10009856 [exp] 459 / 5e-153 AT4G02350 689 / 0.0 exocyst complex component sec15B (.1) Lus10010296 [exp] 385 / 9e-128 AT4G02350 556 / 0.0 exocyst complex component sec15B (.1) Lus10010295 [exp] 310 / 4e-98 AT4G02350 517 / 5e-179 exocyst complex component sec15B (.1) Lus10009857 [exp] 73 / 3e-15 AT4G02350 119 / 9e-33 exocyst complex component sec15B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032100 [exp] 1272 / 0 AT3G56640 1265 / 0.0 exocyst complex component sec15A (.1) Potri.006G034200 [exp] 1258 / 0 AT3G56640 1268 / 0.0 exocyst complex component sec15A (.1) Potri.002G203200 [exp] 790 / 0 AT4G02350 1186 / 0.0 exocyst complex component sec15B (.1) Potri.014G127400 [exp] 788 / 0 AT4G02350 1187 / 0.0 exocyst complex component sec15B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04091 [flax] [poplar] Sec15 Exocyst complex subunit Sec15-like
Representative CDS sequence Show only first row Show all	>Lus10027288 pacid=23145581 polypeptide=Lus10027288 locus=Lus10027288.g ID=Lus10027288.BGIv1.0 annot-version=v1.0 ATGGATGCAAAACCAAAGAGGAGAGCAGTTGTGGAGAATGGGGATACAGGAGGGGGGGAGGACTCGGTCCTTGCAACTCTAATTGGCAATGGTGACGATC TAGGTCCTATAGTCAGGCACGCATTCGACGTGAATCGTCCTGAAGCTCTCCTGCAGCAGCTGAAAGCCGTCGTGAAGAGAAAAGAAGTCGAAATCGAGGA GCTTTGCAAGAGCCACTACGAGGAATTCATCCTCGCGGTTGACGAGCTTCGTGGTGTCCTGGTCGACGCAGAAGATCTGAAAGGCGAGCTCGCGAGCGAT AATTTGAAGCTGCAGGAAGTTGGGAGTTCTCTTCTGATCAAACTGGAGGAGCTTCTCGAATCGTATTCGATTAAGAAGAACGTGACGGAAGCTGTGAGAA TGTCCAAGGCTTGTGTTCAGGTCTTGGAGCTCTGTGTGAAATGCAACAACCACATGAACGATGGTAATTTCTACCCGGCATTGAAGAACTTGGATTTGAT TGAGAAGAATTACTTGAAGAACATTCCCGTGGGGTCGCTTAAAATGGCGGTAGGGAAGACGATTCCAGTCATAAAATCGCATATCGAGAAGAAAGTCACG AGTCAGTTCAACGAATGGCTTGTCCACGTCAGGAGCTCTGCAAAGACCATCGGCCAGACCGCGATAAGCCAGTCTGCATCGGCGCGCCAGAGGGACGAAG AGATGCTCGAACGACAGAGGAAATCCGAGGAGGAGCAGAACGGTTCCGGTTTATTAGGAGATTTTGCATTCACTCTTGATGTCGAGGAAATCGACGAAGA TTCCGTTCTACAGTTCGACATCACTCCGCTGTACCGAGCCTATCATATCCACGCTTGCCTCGGAATCCAAGACCAGTTCCGTGACTACTACTACAAGAAT CGGGTCTTACAGCTACATTCGGATTTGCAGATCTCGTACGGGCAGCCTTTTATTGAATCTTACCAGACCTATTTGGCTCAGATTGCTGGGTACTTCATCG TGGAGGATCGAGTCTTGAGGACCGCGAGCGGTGTTCTATCTTCGGATCAGGTCGAAGCTATGTGGGAAACAGCTAAGAACAAAGTGACATCTCTTTTGGA TGATCAATTCAACAACCATACGGATTCAGCTACTCATCTCCTCCTTGTGAAGGATTACGTCACTCTTCTTGCGGAGACTCTTCGAACATATGGCTATGAC TCGAGGCAGATCCTGGAGGCGCTCGACAAAGGCCGAGAGAAATATCACGACCTTCTCTTGCAGGAATGTCGCGAGCAGATTATCAGCGCTCTCGGAAACG ACACTTACGAGCAAATGATGATGAAGAAGGATACTGATTATGAGAACAATGTCCTCATATTCGAGCTCCAGACCTCGGATATTATGCCTGCTTTTCCTTA TATCGCGCCGTTCTCATCCATGGTGCCTGATACTTGCCGGATCGTTCGATCGTTCATCAAGGGATCGGTGGATTACCTGTCGTACGGTATGCATACGAAT ATCTACGATCTTGTGAGGAAGTATTCGGACAAGTTACTACTCGATGTTTTGAACGAAGTCGTGCTGAGTACAATCAATAGCAGTGCGATTGGGGTTTCAC AAGCGATGCAGATTGCAGCGAACATATCGGTTCTCGAAAGAGCCTGCGAGTTCTTCACTCGCCACGCGGCCCAACTATGTGGAATTCCGGTCCGATCGGT GGAGAGGCCGCAAGCTACTTTGACTGCTAAGGTGATTTTAAAAACATCAAGGGATGAAGCTTACCTTTCCCTGCTGGCTTTGGTGAACGCCAAGCTGGAA GAGTTCATGTCACTTGCGGAAAACATCAACTGGACTTCAGAGGAGACGCCTCAGATCGGAAACGAGTACATGAACGAGGTGGTGATTTATCTCGACACTG TTTTATCGACAGCGCAGCAGATTTTACCCATGGATGCTCTGTTCAAAGTCGGCTGCGGTGCGCTGGAGCACATTTCGAGCTCGATCGTGGCAGCGTTTCT CAGCGAGGGTGTGAAGCGGTTCAATGCCAATGCGGTCCTGTCCCTCAACTATGATCTGAAAATGGTGGAGAATTTCGCCGAGGAGAGGTTCCATACGAGT GGTCTGAGCGAGATATACAAGGGGGGAGGTGGTTTCAAAGCGTGTTTGGTGGAAGCGCGGCAGCTGATTAATCTTTTGTCGAGCAGCCAGCCGGAGAACT TCATGAATCCTGTGATTAGGGAGAGGAGCTACAACAGTTTGGACTATAAGAAGGTGGCTACCATTTGTGAGAAATTCAAGGACGCTGCTGATTCGATTTT CGGCAGTCTTTCGAATAGAAATGCGAAGCAAAGCGCGAAGAAGAAGTCGATCGACGTGCTGAAGAAGAGATTGAAGGACTTCAGCTGA
AA sequence Show only first row Show all	>Lus10027288 pacid=23145581 polypeptide=Lus10027288 locus=Lus10027288.g ID=Lus10027288.BGIv1.0 annot-version=v1.0 MDAKPKRRAVVENGDTGGGEDSVLATLIGNGDDLGPIVRHAFDVNRPEALLQQLKAVVKRKEVEIEELCKSHYEEFILAVDELRGVLVDAEDLKGELASD NLKLQEVGSSLLIKLEELLESYSIKKNVTEAVRMSKACVQVLELCVKCNNHMNDGNFYPALKNLDLIEKNYLKNIPVGSLKMAVGKTIPVIKSHIEKKVT SQFNEWLVHVRSSAKTIGQTAISQSASARQRDEEMLERQRKSEEEQNGSGLLGDFAFTLDVEEIDEDSVLQFDITPLYRAYHIHACLGIQDQFRDYYYKN RVLQLHSDLQISYGQPFIESYQTYLAQIAGYFIVEDRVLRTASGVLSSDQVEAMWETAKNKVTSLLDDQFNNHTDSATHLLLVKDYVTLLAETLRTYGYD SRQILEALDKGREKYHDLLLQECREQIISALGNDTYEQMMMKKDTDYENNVLIFELQTSDIMPAFPYIAPFSSMVPDTCRIVRSFIKGSVDYLSYGMHTN IYDLVRKYSDKLLLDVLNEVVLSTINSSAIGVSQAMQIAANISVLERACEFFTRHAAQLCGIPVRSVERPQATLTAKVILKTSRDEAYLSLLALVNAKLE EFMSLAENINWTSEETPQIGNEYMNEVVIYLDTVLSTAQQILPMDALFKVGCGALEHISSSIVAAFLSEGVKRFNANAVLSLNYDLKMVENFAEERFHTS GLSEIYKGGGGFKACLVEARQLINLLSSSQPENFMNPVIRERSYNSLDYKKVATICEKFKDAADSIFGSLSNRNAKQSAKKKSIDVLKKRLKDFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10027288 [exp]	0	1
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10034856 [exp]	1.7	0.8629
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	3.7	0.8859
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	5.5	0.8741
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	9.7	0.8542
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	10.4	0.8552
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	10.9	0.8305
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037242 [exp]	12.4	0.8247
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025354 [exp]	13.2	0.8440
AT5G64970			Mitochondrial substrate carrie...		Lus10026043 [exp]	14.4	0.8432
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	15.5	0.8106

Compare expression of checked genes

Lus10027288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.