Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40930 1170 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G10570 775 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 761 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 723 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT5G22030 626 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT5G46740 92 / 9e-19 UBP21 ubiquitin-specific protease 21 (.1) AT5G10790 90 / 2e-18 UBP22 ubiquitin-specific protease 22 (.1) AT4G17895 85 / 1e-16 UBP20 ubiquitin-specific protease 20 (.1) AT4G31670 85 / 1e-16 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 83 / 4e-16 UBP19 ubiquitin-specific protease 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038994 [exp] 1687 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10017343 [exp] 768 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10033243 [exp] 760 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10013369 [exp] 669 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 640 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10001661 [exp] 623 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10021253 [exp] 603 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 593 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008276 [exp] 527 / 1e-173 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G033800 [exp] 1341 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 1328 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G449000 [exp] 810 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G152500 [exp] 778 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G214800 [exp] 691 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 595 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.016G067400 [exp] 146 / 1e-37 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.018G123200 [exp] 98 / 8e-21 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1) Potri.018G017000 [exp] 97 / 1e-20 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.006G266100 [exp] 95 / 7e-20 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0125 [flax] [poplar] PF06337 [flax] [poplar] DUSP DUSP domain
Representative CDS sequence Show only first row Show all	>Lus10027289 pacid=23145453 polypeptide=Lus10027289 locus=Lus10027289.g ID=Lus10027289.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTGTCGATGTGCAACGGTGCTGCGGCGGAGCTGTCGCCGGAGGAAGAGAGAGTTTTGATTCGTGATATTGCCCTCGCCGCCGAAGCCAACA GCAAAGAAGGAGACGATTTCTTCTTAATTACCCAAAGATGGTGGCAGCATTGGATTGAATATGTGAACCAAGACCAGGAAAATAGTACCAATGACGGGTC CTCAACGTTGGAGCATTCTGACTCTGCGAGTTGTTCGAAGCGGCCTGCTGTTATTGACAACTCTGATCTAGTACATGATCCAGCATCTAATGATGGCAAT GCTGGTGTTGAGATTCCTGATAGTTTATTGGAGGGTCGTGATTACGTCCTTCTTCCACAGGAAGTTTGGAATCAGCTATTTTCATGGTATGGAGGTGGTC CAGCATTGGCACGCAAAGTGATCAGTTCAGGCCTTTCTCATACAGAATTAGCTGTGGAAGTTTATCCTCTCCGTCTTCAGCTGCTGGTTGTGCACAAAGG TGATCGATCGACCATAAGAATAAGCAAGAAGGAAACTATAGGAGAGCTGCATAGGAGAGCTTGTGAGATCTTTGAACTCAACACAGAAGAAGTATGCATA TGGGATTACTATGGTCAGCGGAAACATGCTTTGATGAATGATATGGATAAGACACTCGATGATGCTAACATACAGATGGATCAGGATATTCTCGTGGAGG TTGTGAACAATGTCAATGGTACTACATTGAATGGTTCTATGAGTTCTGTTATCAACGATGGATCTGTCAAGAAGGAAGCTACTTCCGTTCTTTTAGAGCC TTCTAAGTCAAGGTTATCAATTGCAGGAGGTTTCTCTGCTAGTAAAGGTGCATCTAAAAGCTGTGGCACGGAGTTCTCACAAGCTCAGAACATGACATCG ACCGGTAGAGAGTTGGATAATACATACGGGATCGGTGGTGTTAGTACAAGGGGCTCTAATGGTGGTCTTACCGGGTTACAGAACCTAGGCAACACATGCT TTATGAATAGTGCAATACAGTGCCTTGTTCATACGCCTGAATTTGCTAAATATTTCCGGGAGGATTACCGTCAAGAGATAAATTGGCAAAATCCCTTCGG TATGGTGGGAGAGCTAGCCTTGGCATTTGGTGATTTACTGCGGAAGCTCTGGGCACCTGGACGAACACCAGTTGCTCCTCGTCCATTCAAAGCAAAACTT GCTCGCTTTGCTCCTCAGTTTAGCGGCTACAATCAGCACGATTCTCAGGAACTTCTAGCTTTCCTGTTAGATGGTCTTCACGAAGATCTGAATCGTGTTA AACAAAAGCCATATATAAAGTCAAGAGATGCTGATGGGCGTCCAGATGAGGAAGTTGCTGATGAGTACTGGGCTAATCACATTGCCCGAAATGATTCTAT AATTGTTGATGTGTGCCAGGGCCAGTACAAGTCAACTCTGGTCTGTCCAGTGTGCAATAAAATATCAGTGACATTCGATCCCTTTATGTACCTTTCCTTG CCACTCCAATCTGCCACCACCCGTTCTATGACATTAACTGTTTTTGCCTGTGATGGGAGTTCCTTGCCATCTCTCTACACTGTGTCTATCCCAAAGCATG GATGGTGCAGAGATTTGATCAATGCCATTAGTACTGCTTGTTCCCTGAAGAGCAACGAAGAGATTAGACTTGCTGAGGTACGCAATCATCAGTTCCAGAG ATTTCTAGATGACCCGGTTATGTCTTTGTCTGCTATCAAAGACGACGACCGCCTTGTTGCCTATAAGATTGCAAAGTCATCAAAGCACTTGCTTCTCCAG TTGACTCATCGACGTAAACAGCAGGAAGCAGGAAAAAATGGCTCGTCGCTTCAGTGGAATGCATTTGGAACTCCTGTCATTACATCCATTTCGTACGAAG ATGTCCTTGCAGGAGAAGATGTACAGAGAGAAGTTCAAAAGATTCTTTTACCATGGTTAAGTGGGGAAGCAACAGAGGATTCTGGTAATGGCACTCCTGG TGAAGTTTGTATAACAGATTCAGTAAAGAGCAATGGTTTTGCTTCGAGGTCATTGTCATCCTTAAAAATTTCTCTACAATTTGGCGACGGGAATGGTGAA TTGATTGATCTCTCTGCGAAAGAAGGGAAATCCATCACAGTGAGCCAATCATCAACCTTAGCATTGGTATATGTTGATTGGTCCCTAGATCTCATATCAA AATGCAATGCTAAGTTCTTTGAGAACTTGCCTGAAGTCTTCAAGTTTGGACCTGTGAGTAAGAAAACTCGGAACGAGCCCCTCTCGTTATACACTTGTCT GGAAGCTTTCCTACGCGAGGAACCCTTGGTTCCTGAAGACATGTGGTACTGTCCACAATGCAAAGAACGACGGCAAGCAAGTAAGAAGCTTGATTTATGG AGGCTTCCAGAGGTGCTGGTGATACATTTGAAGCGGTTCTCATACAGCAGATCTATGAAACACAAACTAGAAACCTTTGTTAACTTCCCAATACGCGATT TTGATTTGACAAACTACGTGGCCAACAAGAACAGCACCCGTCGCCAACTTTATGAACTATATGCCCTGACCAATCACTATGGTGGCATGGGGAGTGGGCA TTACACTGCGCACATCAAGCTTTTAGAAGAAAACAAGTGGTACAACTTCGACGACAGCCATATATCGCTTATTAACGAGGATGACGTGAAATCAGCTGCT GCTTACGTTCTGTTTTACCGGAGGGTGAGAAGTAACGATGTTGTCACAAGCAACGGGGAAGTTTCTGGTATAGGGCATAATGATAATGGTTTAATCCGCA AGTAA
AA sequence Show only first row Show all	>Lus10027289 pacid=23145453 polypeptide=Lus10027289 locus=Lus10027289.g ID=Lus10027289.BGIv1.0 annot-version=v1.0 MAEVSMCNGAAAELSPEEERVLIRDIALAAEANSKEGDDFFLITQRWWQHWIEYVNQDQENSTNDGSSTLEHSDSASCSKRPAVIDNSDLVHDPASNDGN AGVEIPDSLLEGRDYVLLPQEVWNQLFSWYGGGPALARKVISSGLSHTELAVEVYPLRLQLLVVHKGDRSTIRISKKETIGELHRRACEIFELNTEEVCI WDYYGQRKHALMNDMDKTLDDANIQMDQDILVEVVNNVNGTTLNGSMSSVINDGSVKKEATSVLLEPSKSRLSIAGGFSASKGASKSCGTEFSQAQNMTS TGRELDNTYGIGGVSTRGSNGGLTGLQNLGNTCFMNSAIQCLVHTPEFAKYFREDYRQEINWQNPFGMVGELALAFGDLLRKLWAPGRTPVAPRPFKAKL ARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKISVTFDPFMYLSL PLQSATTRSMTLTVFACDGSSLPSLYTVSIPKHGWCRDLINAISTACSLKSNEEIRLAEVRNHQFQRFLDDPVMSLSAIKDDDRLVAYKIAKSSKHLLLQ LTHRRKQQEAGKNGSSLQWNAFGTPVITSISYEDVLAGEDVQREVQKILLPWLSGEATEDSGNGTPGEVCITDSVKSNGFASRSLSSLKISLQFGDGNGE LIDLSAKEGKSITVSQSSTLALVYVDWSLDLISKCNAKFFENLPEVFKFGPVSKKTRNEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLW RLPEVLVIHLKRFSYSRSMKHKLETFVNFPIRDFDLTNYVANKNSTRRQLYELYALTNHYGGMGSGHYTAHIKLLEENKWYNFDDSHISLINEDDVKSAA AYVLFYRRVRSNDVVTSNGEVSGIGHNDNGLIRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	0	1
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	1.4	0.8977
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Lus10005032 [exp]	1.7	0.9205
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	2.4	0.8721
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	4.0	0.8595
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10037821 [exp]	4.5	0.8696
AT5G08110			nucleic acid binding;ATP-depen...		Lus10007978 [exp]	7.2	0.8463
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	8.0	0.8165
AT1G21610			wound-responsive family protei...		Lus10028676 [exp]	8.1	0.8656
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	8.4	0.8441
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	10.8	0.8711

Compare expression of checked genes

Lus10027289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.