Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40950 379 / 4e-121 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56660 328 / 5e-103 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT5G11260 50 / 5e-07 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G17609 47 / 3e-06 bZIP HYH HY5-homolog (.1.2.3.4) AT2G18160 46 / 2e-05 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT1G13600 44 / 0.0001 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT2G04038 44 / 0.0001 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT2G42380 44 / 0.0002 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT3G58120 44 / 0.0004 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 42 / 0.0006 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038995 [exp] 1160 / 0 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10010440 [exp] 528 / 5e-179 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012104 [exp] 511 / 1e-171 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002028 [exp] 52 / 3e-07 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002900 [exp] 50 / 8e-07 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10024279 [exp] 48 / 5e-06 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10002185 [exp] 45 / 0.0002 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10037750 [exp] 42 / 0.0002 AT5G49450 85 / 1e-21 basic leucine-zipper 1 (.1) Lus10016884 [exp] 42 / 0.0003 AT5G49450 80 / 8e-20 basic leucine-zipper 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032400 [exp] 497 / 8e-167 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G034500 [exp] 459 / 2e-151 AT2G40950 475 / 1e-157 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G004200 [exp] 54 / 1e-07 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4) Potri.018G029500 [exp] 52 / 2e-07 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 51 / 1e-06 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G251800 [exp] 47 / 6e-06 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 45 / 0.0001 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G257900 [exp] 45 / 0.0001 AT1G42990 101 / 1e-24 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Potri.001G374200 [exp] 44 / 0.0002 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.019G091900 [exp] 44 / 0.0002 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10027290 pacid=23145404 polypeptide=Lus10027290 locus=Lus10027290.g ID=Lus10027290.BGIv1.0 annot-version=v1.0 ATGGCGGATTCCACCGCTGCCTTCGCTGACGCAAACCCTCCTCCGCAATCTATCTCCTTCGCCGATCCTCTCCAAACGCCTCCCCTCGACCCTCTCTTCT TCTCTTCAGACCCCGACAACGACTTCATCAACGATCTCGCCTTCCATTTCGATTTGCACGACCTCGACCCCCAGTACTTCATTCCCGATACCGACGATTC CTTCTTTCTTCCCGACTCCACCACCGATCACGCCGATTTAGGCTCTGCCTTGCCTGAACATGATGGATCGCTGCAAGATTTCTGCTTCGATCACGGGAAT AACAACCGAGTCGATGTGGAGTCGGAAAATTCCGTGATTTCTAGGGATGGCTGCTCTGATGCTGGTAAGTATTTTAACTCCTCTCCTTCTCAGACTAGGA GCTTCGATTCTCATGAGACGATCATTGCTTCTGCTCCTGCTCCTGCTGCTCTCGCGATTGTGAATTCTGCTGCTGCTTCCCCTGTATCGTCACACGGTTC TGGAGATGAAGCTTCTGGAGTTTCGGAGACCATGAATGTGCCTTCTCCTGATTCGAAGAGTTATCCTCTTAGCTCGACTAAGCTGGAAAATGAAGAAGCG AATGAGAAAAGTGGGGGGTTGCCGAAGAGGAAAAAGGAGTTCAGTGATGATACGATTGAAGAGACCACCAGAAGGCAGAAATGTAAGGTATCTGAGACTC CTAGTAACTCAAACCCCAAGGATGCAACGACTGGTTGTGGTGGTGAAGAAGACGAGAAGAAGAAGGCTAGGTTGATGAGAAACCGGGAGAGTGCGCAGCT GTCAAGGCAGAGGAAGAAGCACTACGTCGACGAGCTGGAAGAGAAGGTGAGGGCTATGAATTCCATTATTGCTGACTTGAATGGGAGGGTCTCATATTTC ATGGCTGAAAATGCTACCTTGAGGCAGCAATTGGTGGGTGGGACGCCTATGTATCAACATCCTCCAATGCATTATCCATGGATGCCTCCTGGTGCTCCTT ATCTTGTTCAGGGTTCGAAGGTTCCTCTGGTTCCAATTCCTAGGCTGAAACCACAACAGCCTGCTGCTTCTACCAAATCCAAGAAAGGAGAGACCAAAAA GTCTGGAACTAGAACTAAGAAAGTCGCTAGTGTTAGTTTTATCGGTTTGCTGTGTTTCATTTTGATGTTTAGTGGGTTGGTGCCGCTTATTAATGTTAAG TATGGAGGGCCAGGAGAGAATGTTGCCGAGGGCAATAAGTTTTCTGGTCAGCACTTTCCTGGGAGGGTCTTAGTAGTCGACGGACATTCAAATATATCCA GTGGGAAAACGGGTGTTGGATTCTCTGGTGACACAATCGGTAAAATGCAGTGTCAGAAAGCTAAGAATGGGTGTGATAATTCGAGTGAGCAGCTTCATGC GTCTTTGTATGTCCCCCGGAACAATAAGCTCGTGAAGATTGATGGGAATTTGATAATCCAGTCTGTTCTGGCAAGTGAGAGAACGAAGGGAGAGGCTTCT GAAGCTACAGGTTTAGCAATAGCAAACCACTTGTCGTCAGGTGCTCTGGCCATCCCTGAAGGAACCATCAGAGGGAAGACCTACCATTCTCATGCTGAAC AGCAAAAGGCCATTGGTTCAACATCAGCTGATAAATTGGAGGAGCAATTCAAGTCCTCTGCAGCGGATGGTAAATTACAGCAATGGTTTCATCATGGTCT TGCAGGTCCAATATTGAGTTCTGGTGTCTGCAGTGAAGTGTTTCAGTTTGACACGACGCCATCTCGAGGTGCCATTGTTGCCGCTTCATCGGTCACTAAT CTTACAAGAGAAGGGCAGCAGCAGAGAGCGAACCCCACTGAGAAGAAGAAACATAGAAGGATTCTCCACGCCCTTCCGGTTCCCTTTCCAGCATCGAATC TGAACGTCACTAGAGAACACAGAGGTAGTAACAACAGGACGACCTACGATGTCCAACGAAGCTCCTCTTCAATGGTTGTCTCTGTGCTTGTCGATCCGAG AGAGGTGGGCGATAGCGAAGTTGATGGCGTGATTGTTCAGAAGTCGCTCTCGCGTGTTTTCGTTGTGGTTCTAGTAGATGGTGTCAAGTATGTTACTTAT TCGTGTGTGCTTCCACGCTCTACTCCTCATTTGGTACGAGCTTGA
AA sequence Show only first row Show all	>Lus10027290 pacid=23145404 polypeptide=Lus10027290 locus=Lus10027290.g ID=Lus10027290.BGIv1.0 annot-version=v1.0 MADSTAAFADANPPPQSISFADPLQTPPLDPLFFSSDPDNDFINDLAFHFDLHDLDPQYFIPDTDDSFFLPDSTTDHADLGSALPEHDGSLQDFCFDHGN NNRVDVESENSVISRDGCSDAGKYFNSSPSQTRSFDSHETIIASAPAPAALAIVNSAAASPVSSHGSGDEASGVSETMNVPSPDSKSYPLSSTKLENEEA NEKSGGLPKRKKEFSDDTIEETTRRQKCKVSETPSNSNPKDATTGCGGEEDEKKKARLMRNRESAQLSRQRKKHYVDELEEKVRAMNSIIADLNGRVSYF MAENATLRQQLVGGTPMYQHPPMHYPWMPPGAPYLVQGSKVPLVPIPRLKPQQPAASTKSKKGETKKSGTRTKKVASVSFIGLLCFILMFSGLVPLINVK YGGPGENVAEGNKFSGQHFPGRVLVVDGHSNISSGKTGVGFSGDTIGKMQCQKAKNGCDNSSEQLHASLYVPRNNKLVKIDGNLIIQSVLASERTKGEAS EATGLAIANHLSSGALAIPEGTIRGKTYHSHAEQQKAIGSTSADKLEEQFKSSAADGKLQQWFHHGLAGPILSSGVCSEVFQFDTTPSRGAIVAASSVTN LTREGQQQRANPTEKKKHRRILHALPVPFPASNLNVTREHRGSNNRTTYDVQRSSSSMVVSVLVDPREVGDSEVDGVIVQKSLSRVFVVVLVDGVKYVTY SCVLPRSTPHLVRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	0	1
AT1G65720			unknown protein		Lus10010961 [exp]	1.4	0.9300
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	2.0	0.9355
AT1G64140			unknown protein		Lus10024712 [exp]	4.9	0.9124
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	6.0	0.8939
AT1G65720			unknown protein		Lus10031363 [exp]	6.3	0.9153
AT5G67020			unknown protein		Lus10019344 [exp]	6.7	0.9250
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	6.9	0.9166
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10015944 [exp]	8.1	0.9018
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	8.8	0.9026
AT5G08060			unknown protein		Lus10021149 [exp]	9.2	0.9093

Compare expression of checked genes

Lus10027290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.