Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40820 614 / 0 unknown protein AT3G56480 604 / 0 myosin heavy chain-related (.1) AT2G26770 547 / 0 SCAB1 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038998 [exp] 943 / 0 AT2G40820 611 / 0.0 unknown protein Lus10036073 [exp] 533 / 0 AT2G26770 783 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2) Lus10026809 [exp] 504 / 1e-175 AT2G26770 745 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G033100 [exp] 697 / 0 AT2G40820 687 / 0.0 unknown protein Potri.006G035300 [exp] 697 / 0 AT2G40820 681 / 0.0 unknown protein Potri.009G066800 [exp] 546 / 0 AT2G26770 785 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2) Potri.001G272300 [exp] 542 / 0 AT2G26770 773 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027293 pacid=23145493 polypeptide=Lus10027293 locus=Lus10027293.g ID=Lus10027293.BGIv1.0 annot-version=v1.0 ATGGGAATGGAGACCGTCATCCTTCCAGTTTCGGTTGATGTGAGCTTCCCTTCTGATAAGTTCCCCAAATACAAACTAGGACCTGATAATCAAGTGATGG AAGAGCCAAACGAGGGTAACAAAGGTCCATCTTTGAAGGAAATTGCTGAACAAGAGATAGCACAGCTTTCAGATCAGCATAAGCGCCTCTCCGTTCGCGA CCTGGCTACTAAATTCGACAAGAACTTGGCTTCTGCTGCTAAGTTGGCTCAGGAGGCAAAAATTAGAGAAGTGGCTTCTCTGGAGGGGCATGTCCTGTTG AAGAAGTTGAGAGATGCATTAGAATCTCTGAGAGGACGAATGGCAGGGCGAAACAAGGAGGATGTGGAAAAGACTATCTCTATGGTGGAAGCATTGGCTG TGAAGTTGACTCAAAAAGAAGGTGAATTAATTCAGGAGAAGTTTGAAACTTCTGAAGATGCCAAGAAGTTGGTCAGCCAAGAAAGATCATTTGCTTGTGC TGAAATTGAAAGTGCAAGGGTTGTTGTTCAGAGGTTTGGAGAGGCCTTAGAGGAAGAAGAAAGGAATGCCCAAACTTCTAAAGATGTGGCTCCTGATGTG GAGGTACTACTTGAGGAGATTCAAGAAGGTAGAAGAATCAAAATGTTGCATCATCCAAGCAAGGTGATGGACATGGAGCATGAACTTCGTGCACTGAGAG CTCAAATCCGAGAGAAAGCCATCTTCTCAGTGAAACTTCAGAATCAGCTGGCAATCAGCAAAAGAGTAGAGGGAAATAAATCAGCAATATACAGAATAGA AGGTGCTGAGAATCTTGGTTCATGTTTGCGGCTCCAACCTCGTTTAAACGATGCTCCGCCACTTTCAAAGTGCTCGATTCAGTGGTACCGTGTTTCTACC GAAGGCAGTCACAACGAAGTTATTCTAGGCGCTGAGAAGTCGATCTATGCTCCTGAACCATTTGATGTTGGCCGAGCTCTTCAAGTTGACATTGTTTCAA ATGGCCAGAAAGTTAGCGTAACAACTGCTGGTTATATCGAGCCTGCTCCGGGACTGATGAGCCGAGTTGAGACACTTCTGAAGAAATCTAGTGCTGAATT TAGCGTAACTATTTCTCAAATCAATGGGCAAGATAATTCATCACAATCTGTTCACTCATTTAGTGTCGGGAAGACGAGGATAAAACTTAGCAGAGGATGG ATCACTAAGGGTAGAGATATTTACTCTGCATCTATGAAGCTATGTGGAGCTCGAGCAACTAGTAACAATGCTGCGGCGAAGTCAGTATTTTGGCAAGCAA GGAAGGGACTTTCCTTTGTGCTGAAGTTCGAAACAGAACAGGATAGGAACTCAGCCATAATGATCGCCAGAAGGTTTTCTCTTGATTGCAACGTGATACT TGCTGGACCAGATGACCAAGTATAA
AA sequence Show only first row Show all	>Lus10027293 pacid=23145493 polypeptide=Lus10027293 locus=Lus10027293.g ID=Lus10027293.BGIv1.0 annot-version=v1.0 MGMETVILPVSVDVSFPSDKFPKYKLGPDNQVMEEPNEGNKGPSLKEIAEQEIAQLSDQHKRLSVRDLATKFDKNLASAAKLAQEAKIREVASLEGHVLL KKLRDALESLRGRMAGRNKEDVEKTISMVEALAVKLTQKEGELIQEKFETSEDAKKLVSQERSFACAEIESARVVVQRFGEALEEEERNAQTSKDVAPDV EVLLEEIQEGRRIKMLHHPSKVMDMEHELRALRAQIREKAIFSVKLQNQLAISKRVEGNKSAIYRIEGAENLGSCLRLQPRLNDAPPLSKCSIQWYRVST EGSHNEVILGAEKSIYAPEPFDVGRALQVDIVSNGQKVSVTTAGYIEPAPGLMSRVETLLKKSSAEFSVTISQINGQDNSSQSVHSFSVGKTRIKLSRGW ITKGRDIYSASMKLCGARATSNNAAAKSVFWQARKGLSFVLKFETEQDRNSAIMIARRFSLDCNVILAGPDDQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40820			unknown protein		Lus10027293 [exp]	0	1
AT2G40820			unknown protein		Lus10038998 [exp]	1.0	0.9237
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	2.0	0.9061
AT3G54030			Protein kinase protein with te...		Lus10021112 [exp]	2.4	0.8982
AT5G50150			Protein of Unknown Function (D...		Lus10001248 [exp]	3.2	0.8853
AT3G52900			Family of unknown function (DU...		Lus10043423 [exp]	3.5	0.8471
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	4.0	0.8862
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	5.7	0.8523
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	5.9	0.8635
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	6.9	0.8383
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	6.9	0.8796

Compare expression of checked genes

Lus10027293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.