Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15180 576 / 0 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038999 [exp] 196 / 4e-60 AT3G15180 119 / 1e-31 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G396500 [exp] 719 / 0 AT3G15180 623 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10508 [flax] [poplar] Proteasom_PSMB Proteasome non-ATPase 26S subunit
Representative CDS sequence Show only first row Show all	>Lus10027294 pacid=23145506 polypeptide=Lus10027294 locus=Lus10027294.g ID=Lus10027294.BGIv1.0 annot-version=v1.0 ATGGACGTTCCTGCTCAGTTACTCGAATGCGCCTCCGATTTTGCACTATATCCTGGTCCTCAAAGCGACGATGCTGCCAAACAGTTTCTTGATCGGTTTC CTCTTCCAGTCATTCTAAGTGTTTTGCAGAACGGAAAAGATGCGCCTGGGCTGGAGGATGCTTTGGTTCCTTGTTTGGAGAGGCTTTTCTCTACTAAGTA TGGAGCTTCTCTCATCCCGCAGTACCTGCCTTTTCTGCAGATGGCTTTGAGTGCAGATAGTCAGAATATCAGATGCCTAGCTTGCAAAACGGTTGCTTAT CTTTTGGAGAATAACTGTGGAGAAATCACATCTCCTGAACAGTTGATTTGTGATCATGGAATATACCCGCTTTTGCTCGATTGTCTTGTCAATGGCAATG AACAAGTATCAGCTGCTTCAATTTATGCAATCACTAAGTTGGCTGTCTCTCCAAAAGGCATGGAGATCATCTTCCCCTCAAACGATGTTGAAGCTACGCA TTTAAGGAATCTCTCAGCCCGGTGTTCATCATTGGGCCGGGTGCGAGTTTTGTCTTTGATAGTTAAGCTATTCGCTGTTTCCCCCAAAGTGGCTTCAGCA ATTCACAGCTCCAATTTGCTTGGCTTATTGGAGGCCGAAGTCAACAATACCAGTGACATGCTTGTCACTCTAAGTGTGTTGGAGCTTTTTTATGAGTTAG CTGAAGTTGAACATGGGACAGAATTCTTGTCCAAGACAACCCTTCTCCAGTTACTTACTCGTATAGTCAGTGACACGACAATGGATGCAATACTGAGATC AAGAGCAATGATGATAAGTGGACGGCTTTTGTCCGTTGATAACATATACAAATTGAGTGATGAATCTGGTGTTAAATCCCTTATACTAGCTATTGAAGGG AGACTTCTATCCGATACTCTGGATTCTGATGAGTGTGAATCTGCACTTGAAGCATTGGGCCAAATTGGTTTATCGACCCCTGGAGCAACGCTAGTACTCA CCTTATCACCGCCTCCAGCAAGACATGTAATCGATGCTGCATTTGATAGGCAAATGCGTGGTAAACAGTTGGCTGGACTCCATGCACTTGGAAATATTTC AGGAGAATCTCGTGCAGAAGACGATAGGATTCTGAAAGCTGACGCTGAAGAGTCTCTTAGACGGTTGATCTATGAAACAGCATCTAGAAGCTCAAGGCTG ACTCCATCAGGTCTTCTGCTTTATGTTCTGCAACAAGCTTCAGAAGTTCGTTTGGCTGCTTACAGAGTGATTACTGGATTAGTAGCTCGGCCATGGTGTT TAACTGAGGTTTGCTCGAAACAAGAAATTATAAACATCATTACTGATCCAAGCACAGAGTCCACAAAAGGAGGGATGGAAGCTAAATATAAATGTTGCAA GGCAATCCAGGAAGGTTTCATCAGTTCAACCAGACTGAGTAGCAACCCTGCTCTTTCTGGATTAGCTGCCAAGTTGGAGGAAGCAGTGAGTAGGGGTCCT TACCTCACACGCAAGAATCGTGAAGCTCAACCCGTCGTTGTGACCGCTGACCGATTCTAA
AA sequence Show only first row Show all	>Lus10027294 pacid=23145506 polypeptide=Lus10027294 locus=Lus10027294.g ID=Lus10027294.BGIv1.0 annot-version=v1.0 MDVPAQLLECASDFALYPGPQSDDAAKQFLDRFPLPVILSVLQNGKDAPGLEDALVPCLERLFSTKYGASLIPQYLPFLQMALSADSQNIRCLACKTVAY LLENNCGEITSPEQLICDHGIYPLLLDCLVNGNEQVSAASIYAITKLAVSPKGMEIIFPSNDVEATHLRNLSARCSSLGRVRVLSLIVKLFAVSPKVASA IHSSNLLGLLEAEVNNTSDMLVTLSVLELFYELAEVEHGTEFLSKTTLLQLLTRIVSDTTMDAILRSRAMMISGRLLSVDNIYKLSDESGVKSLILAIEG RLLSDTLDSDECESALEALGQIGLSTPGATLVLTLSPPPARHVIDAAFDRQMRGKQLAGLHALGNISGESRAEDDRILKADAEESLRRLIYETASRSSRL TPSGLLLYVLQQASEVRLAAYRVITGLVARPWCLTEVCSKQEIINIITDPSTESTKGGMEAKYKCCKAIQEGFISSTRLSSNPALSGLAAKLEEAVSRGP YLTRKNREAQPVVVTADRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15180			ARM repeat superfamily protein...		Lus10027294 [exp]	0	1
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	15.0	0.7596
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	30.9	0.7351
AT5G05450			P-loop containing nucleoside t...		Lus10009838 [exp]	33.7	0.6490
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10028139 [exp]	36.9	0.7015
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027157 [exp]	47.9	0.7078
AT3G54750			unknown protein		Lus10015991 [exp]	69.3	0.7067
AT5G07400	FHA		forkhead-associated domain-con...		Lus10032515 [exp]	107.1	0.6561
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10024964 [exp]	160.9	0.6329
AT5G52890			AT hook motif-containing prote...		Lus10002064 [exp]	162.4	0.6519
AT3G18860			transducin family protein / WD...		Lus10040490 [exp]	225.7	0.6323

Compare expression of checked genes

Lus10027294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.