Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05130 236 / 3e-70 DNA/RNA helicase protein (.1) AT5G43530 129 / 3e-32 Helicase protein with RING/U-box domain (.1) AT5G22750 119 / 6e-29 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT1G02670 114 / 2e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G11100 112 / 1e-26 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT1G61140 110 / 6e-26 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G05120 108 / 2e-25 Helicase protein with RING/U-box domain (.1) AT1G50410 107 / 9e-25 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G20010 102 / 4e-23 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT3G16600 84 / 2e-17 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039001 [exp] 612 / 0 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 119 / 6e-29 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10030044 [exp] 117 / 4e-28 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10011211 [exp] 112 / 1e-26 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10018465 [exp] 112 / 2e-26 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10041008 [exp] 110 / 6e-26 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10043365 [exp] 108 / 2e-25 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10013452 [exp] 99 / 5e-22 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10019523 [exp] 86 / 5e-19 AT5G22750 257 / 3e-79 DNA/RNA helicase protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G035700 [exp] 245 / 2e-73 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 202 / 1e-57 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 188 / 8e-53 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 186 / 4e-52 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 166 / 7e-45 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 119 / 5e-29 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.014G154600 [exp] 117 / 3e-28 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.004G037700 [exp] 114 / 4e-27 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.011G046400 [exp] 112 / 1e-26 AT1G61140 958 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.004G189400 [exp] 112 / 1e-26 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027296 pacid=23145425 polypeptide=Lus10027296 locus=Lus10027296.g ID=Lus10027296.BGIv1.0 annot-version=v1.0 ATGGCTGTCACGGGTACTCCTGTCCAGAATGGTCCTTCTGATATGTTTCCCTTGATGGCTTTCTTACAGTTCGATCCTTTCTCCACCAAAAGCTATTGGC AAAGGCTAATACAGCGCCCGATACTTGCAGGAGATAGTAGTGGCCTTTCACGACTGCAGGTTTTAATGGCTACGGTTTCCTTGAGAAGGACGAAAGAGAA AACTCTAGTTGGCTTACCATCTAAAGTGGCGGAGACGTGCTATATTGAACTGTCCGATGAAGACCGCCAACTGTGCGATGATGTTGAACAAAAGGCTAAA CTTCTTGTTCAGGGCTTCATTAATGCAGGGAGTTTAACACACAATTATTCAGCTGTGCTTTGTTTGATTCTACAGCTTCGACAGATTTGCAATGATTCAG CTTTGTGCCCCCCTGATCTCAAATCACTTCTTCCTTCTTACACTATGGGAGATGTATCTACCAACCCAGAGCTGTTGAAAAAGATTGCAGTATTGCTGCA AGATGGTGAAGATTTCGAGTGTCGTATTTGCATCACCCCACCAACTGACACTATAATCACTTGCTCTCCACCAAAGACTCTCGGCACCGAAGAAGACGAT CAAACTTCCTCATCATCACAATCTCTTCTACCATCATCATCCAAAGTGTCAGCACTTCTGAAACTCCTCACCGCCTCCAACAACGAAGACCCAACAACGA AATCCGTAGTCTTTTCACAGTTCCAGAAGATGCTGCTACTCCTCGAGGGCCCACTGAGAGCAGCCGGTTTCAAAACCTTGCGATTAGACGGATCGATGAG TGCGAAAAAAAGGTCACAAGTGATGAAGGAATTCGGAACAATGGGAGTAGGAGATGACGATGAGCCGACAATTCTTTTGGCGAGCCTCAAGGCATCCGGA GCCGGTTTAAATCTAACGGCTGCATCAAGGGTGTACTTGTTTGAGCCGTGGTGGAACCCTGCAGTTGAAGAACAGGCTATGGACAGAGTCCACCGGATCG GGCAGAAGAAGGACGTTAGAGTTACGAGGTTGATCACCCGAAATAGTATCGAAGAGAGGGTGCTGGAGATGCAAGAAAGGAAGCAGAAGATGGCGGAGGA AGCTCTTGGAGAGCGCAGGACGAAGTCTCAGAGGGAAGTGAGCACGGATGATATCCAGAGACTCGTGTCATTGTGA
AA sequence Show only first row Show all	>Lus10027296 pacid=23145425 polypeptide=Lus10027296 locus=Lus10027296.g ID=Lus10027296.BGIv1.0 annot-version=v1.0 MAVTGTPVQNGPSDMFPLMAFLQFDPFSTKSYWQRLIQRPILAGDSSGLSRLQVLMATVSLRRTKEKTLVGLPSKVAETCYIELSDEDRQLCDDVEQKAK LLVQGFINAGSLTHNYSAVLCLILQLRQICNDSALCPPDLKSLLPSYTMGDVSTNPELLKKIAVLLQDGEDFECRICITPPTDTIITCSPPKTLGTEEDD QTSSSSQSLLPSSSKVSALLKLLTASNNEDPTTKSVVFSQFQKMLLLLEGPLRAAGFKTLRLDGSMSAKKRSQVMKEFGTMGVGDDDEPTILLASLKASG AGLNLTAASRVYLFEPWWNPAVEEQAMDRVHRIGQKKDVRVTRLITRNSIEERVLEMQERKQKMAEEALGERRTKSQREVSTDDIQRLVSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05130			DNA/RNA helicase protein (.1)		Lus10027296 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	1.4	0.9738
AT3G01430			unknown protein		Lus10014527 [exp]	4.7	0.9669
AT3G17152			Plant invertase/pectin methyle...		Lus10037793 [exp]	5.3	0.9569
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	6.2	0.9553
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	7.7	0.9662
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	8.9	0.9645
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	11.0	0.9389
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10005997 [exp]	11.4	0.9582
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	13.0	0.9638
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	13.6	0.9615

Compare expression of checked genes

Lus10027296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.