Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22270 590 / 0 Topoisomerase II-associated protein PAT1 (.1) AT4G14990 583 / 0 Topoisomerase II-associated protein PAT1 (.1) AT1G79090 439 / 4e-139 unknown protein AT5G19750 204 / 9e-59 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43140 80 / 3e-16 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G14860 70 / 6e-13 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 65 / 3e-11 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G42770 62 / 3e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT3G24570 56 / 2e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 48 / 2e-05 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039002 [exp] 1424 / 0 AT3G22270 734 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10010445 [exp] 1045 / 0 AT4G14990 721 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10012099 [exp] 1018 / 0 AT3G22270 702 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10031210 [exp] 527 / 1e-172 AT1G79090 766 / 0.0 unknown protein Lus10031788 [exp] 485 / 2e-156 AT1G79090 763 / 0.0 unknown protein Lus10039003 [exp] 309 / 2e-97 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10012098 [exp] 236 / 4e-70 AT5G19750 259 / 4e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10010446 [exp] 231 / 7e-69 AT5G19750 258 / 2e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10002118 [exp] 77 / 4e-15 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G020100 [exp] 823 / 0 AT3G22270 733 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.006G021900 [exp] 816 / 0 AT3G22270 699 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020600 [exp] 596 / 0 AT3G22270 540 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.011G143900 [exp] 541 / 4e-178 AT1G79090 734 / 0.0 unknown protein Potri.001G457800 [exp] 508 / 1e-165 AT1G79090 687 / 0.0 unknown protein Potri.016G029700 [exp] 248 / 3e-74 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.006G032500 [exp] 245 / 2e-73 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 76 / 7e-15 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.009G090600 [exp] 76 / 1e-14 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.011G007100 [exp] 57 / 9e-09 AT4G04470 230 / 1e-77 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10027297 pacid=23145513 polypeptide=Lus10027297 locus=Lus10027297.g ID=Lus10027297.BGIv1.0 annot-version=v1.0 ATGATGATGTCGATGATGACTACGGTGCCGCAAAGCCCAGTATCCCTCACCCGCAAAACCCTGCTCTTCGACGGCCTAACTCGCTCGCCCTCTCCTCATT CCTTCTGCTCTAACTCCCTTCATATAACTGGTTTTCTGTTTACGGATTTGGATTCTTCTGAATATGGATTTAGGCAGCTGGGTCGCCATCATTTACGGGT ATCGGCTGTTTCCGGTGGAGGAGGGTCTGGTGGTGGTGCCGGCAGGATAGGAGGCTCCGGCGGAGATGGAAATTCCGGTGGTGGAAGCCCCGATGGTGGG AATCATCACTGGTCTTTACTTTCATGGTATCTGAGCCTTCTAGCCAAATATCCTGTTCTTACCAAGGCTGTAACTTCCGGACTTCTGAATTTTCTTGGAG ACATAGTCTGCCAGCTTTTGATTGATAAAGCTCCATCACCAGACTTCAAGAGGACATCCCGATTTTCCTTCTTGGGACTTGTACTTGTTGGTCCTGCTTT GCATTTCTGGTATTTGTATTTGAGCAAACTGGTGACAATTCCTGGAGCAGCAGGTGCATGCACTCGTCTTATACTCGATCAGTTCCTTTTTGCTCCGGTT TTTCTCGGGGCCTTCTTATCTACATTACTTGTGCTTGAAGGAAGGCCATCCCAAGTTGTACCAAAGCTCCAACAGGAGTTGTTTTCTTCTGTTGTAGCAA ATTGGCAACTGTGGATCCCGTTTCAATTTCTGAACTTCAGATTCATGCCACAACAGTTTCAGGGTTCATGGAATCCTAGCTGTATGTATATGGAGCGATC TGCTTCCGGAAAAGATGTTGCCATGAGGGACTTGGCCCAGACTTCCTCCACCGGTGCTCTGTTTGATGCTTCACAATACGAGTTTTTTGGTCAACATGCT ACTGCACAAGGACTGGAGTTGGGTGGTCTGGAAGAAGATGACAATCCAGTCTTCGGATCTGTTGGTGATGAATATCGCTTGTTTGATGATGGTGCAAGTG TAGGATCCTTATCCGATATGGATGATTTGGCGAGTACTTTTGCAAAGTTGAACAGAGTTGTTACTGGTCCAAAGAATCCCGGGGTGATTGGTGATAGAGG ATCAGGATCCTTCTCCAGGGAAAGTTCATCTGTTGCTGAATGGGCACAAGATGCTGAATCTTCTTCCTGGCTAGATCAGCATGGGTTTGATCCAGATTAT CATGAAAGCAGGAGGACTTTATCACTTAACCTACCTCCAGATTTTCATGAAAGCAAGAGGACTTTATCACTTAACCAACCTTCATCTGTGAGGTTTACAG AATCCAAACCTTTGTACAGAACTTCCTCTTACCCCGAGCAGCAACATGGAGAATTCAGTAACAACTGGTTAGATCAGCAGATATATGATAAAGAGAGTGT TCAGGAAAACAAGAGATGGTCGTCACAGCCATCTATTCATTTCGCTGATGCTAAACCTTTGCACAGAACTTCTTCATATCCTCTACAGCAACACCAGCAA CATTTCCCCAGTGAGCCAGCGCCATCTAATTTCACTTCGTTTCCTCCTCCCGCCCCGGGGGCCGGTTTACATCGGGGAGCACAGTTCGGTGGAAGTATGT CACAGGTCACAACCCATGGTCTTCCTTTTAGTAACAGGCATCAAAAGCAATGGGTTAATCATGGTGGCTTGCTGAATATAGATCATTCTAGTCTCTTGCA GAGTGTATTGCAGCAACAGTTATCGCATCAAAATGGGCTGATGCCTCCACAGTTGTTGTCACCACAGCAGCGATTTCACCCCTCAGCTCAACCATCTATG GCTCATTTTGCCGCATTGCAGTCCCAACTTTATGGTTCACATTCATCAGCACAGAAATTAATGCTGGGTTTAGGTGACAGTAGGGATCAAAAGCCTAAAT CATCTCATAGAGGGCGCCATAATTCGCGGTCTTCACAGCAAAGTTCTGAGACTGCTAGTCAAAGAAGCGATGGTGGTGGATCATCAATCCAATTTAGATC GAAATATATGACATCTGAAGAGATTGAGAGCATACTGAAAATGCAACATGCTGCTGCTACACATGGTAATGACCCCTATGTTGATGACTATTATCATCAA GCTCGGCTTGCCAATAAATCTACAGGCTCAAGGTCAAAGCATCATAATTTCTGCCCATCTCACCTGAAAGAGCAACCACATCGATCTCGTAATAGCACAG AGCAGCAGTCGTATCATGTTGATGCACTTGGGAAGGTTCCTATACCCACCATACGTAGGCCTCGGCCTCTCCTTGAAGTTGGTCCTGTTTCCACTGATGG TGGTAGCGCTGAGCAAATCTCTGAAAGACCTCTTGAGAAGGAACCAATGCTTGCAGCGAGAGTGACTGTTGAAGATGCCCTGGCTCTCCTTATTGATGTT GATGACATTGATCGGTACCTTCTATTTAATCAACCTCAAGATGGCGGTGCGCAGCATAGAAGGAAGCGGCAGATCCTGCTCGAGACTCTAGCTACAGCAC TCCAGCTCGTTGATCCTCTTGGCCAGAGTGGAAATACTACCGGGCCGGCTTCTAAAGATGATATTGTGTTCTTGCGCTTGGTTTCTCTGCCAAAGGGTAG AAAACTTATCACAAAGTTTCTTCAGCTTCTAGTACCGGGTAGCAACCTTATCCGGATTCTCTGCATGGCCATTTTCCGGCATTTAAGGTTTTTGTTCGGT GGTGTTCCCTCTGATCCTTCGGCAGCCAAGACGAGTTTGAATCTGTCGAAGGTAGTGTGTGTTTCTGTAAGCGGTATGGATCTCCACGCACTTAGTGCTT GCCTTGTTGCAGTTGTTTTCTCATCAGAACAGCCACCATTTCGACCTCTTGGTAGTACGGCTGGTGATGGGGCTTCGGTTTTATTGAAGTCGGTTCTTGA GAGAGCTACTAAACTACTAAGCGATCCTCAAGCTGCTGCCTTTGGTCCTACTGTTCCCAACTTTGCTCTCTGGCAAGCATCCTTTGATGAATTTTTTGAC CTGCTGACTAAGTACTGCCTGGCGAAATATGAAACTATCCTCCAGTCGGTCTATGCAAAAACGACAGCTGCTACAGATGATATTGATGAAGACGTTCGGG CAGCTACTAAGCGTGAGATGCCTGTGGAGCTGTTGCGTGCTTGCCTTCCACACACTAATGAAAAACAAATGGACCTCTTGAGACATTTTGGACAGCAACG AGGTTCTATGATTGGATTGACTGCACATTCAGGTTCCGGTGGCATCATAAGCTCTGAATCAGTGAGAAGTTAA
AA sequence Show only first row Show all	>Lus10027297 pacid=23145513 polypeptide=Lus10027297 locus=Lus10027297.g ID=Lus10027297.BGIv1.0 annot-version=v1.0 MMMSMMTTVPQSPVSLTRKTLLFDGLTRSPSPHSFCSNSLHITGFLFTDLDSSEYGFRQLGRHHLRVSAVSGGGGSGGGAGRIGGSGGDGNSGGGSPDGG NHHWSLLSWYLSLLAKYPVLTKAVTSGLLNFLGDIVCQLLIDKAPSPDFKRTSRFSFLGLVLVGPALHFWYLYLSKLVTIPGAAGACTRLILDQFLFAPV FLGAFLSTLLVLEGRPSQVVPKLQQELFSSVVANWQLWIPFQFLNFRFMPQQFQGSWNPSCMYMERSASGKDVAMRDLAQTSSTGALFDASQYEFFGQHA TAQGLELGGLEEDDNPVFGSVGDEYRLFDDGASVGSLSDMDDLASTFAKLNRVVTGPKNPGVIGDRGSGSFSRESSSVAEWAQDAESSSWLDQHGFDPDY HESRRTLSLNLPPDFHESKRTLSLNQPSSVRFTESKPLYRTSSYPEQQHGEFSNNWLDQQIYDKESVQENKRWSSQPSIHFADAKPLHRTSSYPLQQHQQ HFPSEPAPSNFTSFPPPAPGAGLHRGAQFGGSMSQVTTHGLPFSNRHQKQWVNHGGLLNIDHSSLLQSVLQQQLSHQNGLMPPQLLSPQQRFHPSAQPSM AHFAALQSQLYGSHSSAQKLMLGLGDSRDQKPKSSHRGRHNSRSSQQSSETASQRSDGGGSSIQFRSKYMTSEEIESILKMQHAAATHGNDPYVDDYYHQ ARLANKSTGSRSKHHNFCPSHLKEQPHRSRNSTEQQSYHVDALGKVPIPTIRRPRPLLEVGPVSTDGGSAEQISERPLEKEPMLAARVTVEDALALLIDV DDIDRYLLFNQPQDGGAQHRRKRQILLETLATALQLVDPLGQSGNTTGPASKDDIVFLRLVSLPKGRKLITKFLQLLVPGSNLIRILCMAIFRHLRFLFG GVPSDPSAAKTSLNLSKVVCVSVSGMDLHALSACLVAVVFSSEQPPFRPLGSTAGDGASVLLKSVLERATKLLSDPQAAAFGPTVPNFALWQASFDEFFD LLTKYCLAKYETILQSVYAKTTAATDDIDEDVRAATKREMPVELLRACLPHTNEKQMDLLRHFGQQRGSMIGLTAHSGSGGIISSESVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22270			Topoisomerase II-associated pr...		Lus10027297 [exp]	0	1
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10034133 [exp]	4.1	0.8791
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10039983 [exp]	7.1	0.8666
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	9.6	0.8699
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	22.6	0.8298
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	24.0	0.8394
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	31.2	0.8409
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	32.3	0.8144
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	33.6	0.8494
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	36.4	0.8176
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	36.7	0.8454

Compare expression of checked genes

Lus10027297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.