Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56970 114 / 4e-30 bHLH ORG2, bHLH038 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G04150 85 / 3e-19 bHLH bHLH101 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56980 84 / 2e-18 bHLH ORG3, bHLH039 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41240 82 / 4e-18 bHLH bHLH100 basic helix-loop-helix protein 100 (.1.2) AT5G65320 47 / 7e-06 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G51780 45 / 9e-06 bHLH bHLH036 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 42 / 0.0004 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G71200 41 / 0.0005 bHLH bHLH160 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039006 [exp] 301 / 3e-102 AT3G56970 142 / 1e-40 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010453 [exp] 114 / 8e-30 AT3G56970 126 / 8e-35 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003823 [exp] 104 / 7e-26 AT3G56970 129 / 1e-35 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007101 [exp] 44 / 0.0001 AT2G31220 268 / 8e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 44 / 0.0001 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10017152 [exp] 44 / 0.0001 AT5G56960 196 / 4e-56 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10024812 [exp] 43 / 0.0002 AT1G49770 156 / 6e-46 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011172 [exp] 41 / 0.0004 AT4G20970 144 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G037600 [exp] 98 / 7e-24 AT3G56970 184 / 9e-58 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G037300 [exp] 98 / 7e-24 AT3G56970 162 / 5e-49 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037200 [exp] 87 / 5e-20 AT3G56970 168 / 2e-51 OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G148800 [exp] 41 / 0.0008 AT5G56960 204 / 4e-59 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G305100 [exp] 41 / 0.0008 AT1G49770 180 / 1e-54 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10027300 pacid=23145387 polypeptide=Lus10027300 locus=Lus10027300.g ID=Lus10027300.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCTAGGCTAGAGCCATATAGCAACCATTATTCACCATTTCAACATACAACAATGTTGGCAATGTCATCTACATCATCTTCAACCAATTTTG GAGGATCATCGTCATGGCCCTCCAATTCCTTGTTATTAGAAGACCCATTAATCACATTACTACCTAATTACCATACTAATCAAGATCATCAGTCTTCAAC ATCTCCTCCTCCATTCTTCTGTGTTCCGGCCGCTGCGGAGCCAGAGCATCAGCTCAAGGGGAGTAGTACTGGCAGTGGTGGCACGACCACGACGAAGAAG TTGAACCATAATGCAAGTGAACGCCACCGTCGGAAGAAGATCAACACCCTCTATTCCTCCCTCCGCTCCTTGCTTCCCCAGTCCGATCACCATCCCACGA AGAAAGTGAGCATACCGATAACAGTGTCGAAGGTGCTGAAGTACATACCGACGCTCGAACAAGAAGTGGAAGCACTAGTTCAAAAGAAGAAAGAATTGTT GTCAACCATACCTAACCATAATCAAGATTTTGATCATGGTTACAATGGTGATGATGATCTAGGAAGAAGTGGTAATCAAACGAGTAGTTTCTCCCCATCA TCTTCATCATTGATGTCATCCTCATCAACAGTGTCCACTAGTTGGATAAGTGAAGAAGAAGTCATGGTTCAAGTTTCCATTGCTTGTGATGATAACAACA ACATATTTCCTACATCAGAGATCTTGTTGCACCTCCAACACTCCGGATTCACTCTACTCAACTCTTCCTCTTTCGAGTCTTTCCGCGGCAGGGGTTTCTA CAACTTCCATCTACAGGTAGAAAGTAGCCATGGAGTAGAAGTAGTGGATACTGAAGCTCTAAGTGAGAAGCTGCTGAGATTATACGAAAGCAAGCCACGA ATCATCATTCGTAACTAG
AA sequence Show only first row Show all	>Lus10027300 pacid=23145387 polypeptide=Lus10027300 locus=Lus10027300.g ID=Lus10027300.BGIv1.0 annot-version=v1.0 MAASRLEPYSNHYSPFQHTTMLAMSSTSSSTNFGGSSSWPSNSLLLEDPLITLLPNYHTNQDHQSSTSPPPFFCVPAAAEPEHQLKGSSTGSGGTTTTKK LNHNASERHRRKKINTLYSSLRSLLPQSDHHPTKKVSIPITVSKVLKYIPTLEQEVEALVQKKKELLSTIPNHNQDFDHGYNGDDDLGRSGNQTSSFSPS SSSLMSSSSTVSTSWISEEEVMVQVSIACDDNNNIFPTSEILLHLQHSGFTLLNSSSFESFRGRGFYNFHLQVESSHGVEVVDTEALSEKLLRLYESKPR IIIRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10027300 [exp]	0	1
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10018917 [exp]	9.9	0.7280
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10013014 [exp]	11.0	0.7323
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	13.2	0.7980
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10027947 [exp]	14.5	0.7072
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	14.8	0.7166
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	21.8	0.7046
AT2G03630			unknown protein		Lus10026665 [exp]	22.4	0.6864
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	24.7	0.6793
AT5G57880		MPS1, ATPRD2	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10010784 [exp]	28.6	0.7446
					Lus10022893 [exp]	28.7	0.6802

Compare expression of checked genes

Lus10027300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.