Plant FIBer expression Database

Lus10027301 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18310 100 / 4e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025089
[exp]
239 / 3e-73 AT3G18310 516 / 1e-169 unknown protein
Lus10023992
[exp]
239 / 3e-72 AT3G18310 518 / 4e-163 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G041300
[exp]
176 / 3e-50 AT3G18310 593 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10027301 pacid=23145479 polypeptide=Lus10027301 locus=Lus10027301.g ID=Lus10027301.BGIv1.0 annot-version=v1.0
ATGTACTCAGTACATTGGTTTTGCGTTAGAATTGATGAAGCTACTAGTGAGAAGAAAAAGAAGCATGCTTTAGTGTATATGGACAGCAGAAGTTTCAAAA
TCTCTGCCGTTGTAAGTGCTTGCTGGAGTCACCATTGGCTGGAACAGTGCATTGTTCTGTTGGAAAATGGTTCTTTGTTTCTGTTTGATTTAGAATCATC
GTTTCGAAGAACGCTGCTGAAAGTGTCGTGGGATGATGATGAATTATTGCACAAGGAGGATAATTGTAAATGGTTGGGTTGTGAGTTCAGTTGGCATCCT
AGAACACTGATCGTTGCACGCTCTGATGCTGCTTTCTTGGTTGATTGGCGGTTCGATGATATAAAGGTGACTTGTTTAGCAATACGGGAGGGAACTCACG
ACGATTCCAAGCTTTCTCCAAGGCAGTTTCCAGTGATTTCCGCTTCGTATTGGCATCCAGTAGCTTATACCTTTAGGCTCTCCGACTTGAGGTCGAAGTC
AAGAGACGATACTACACACGAGTGGGATGATAAATCGGGTTTCGGCATTGTACTGGGATCGTTCTTGAATTCCGAGTTCAGCCTCTTTTGTTACGGACGG
CCTTACAAGTCGGTTGGTTCTAAAGATTTCTCAACCCGTTTTATGCGTGGGGGCTCCCTTCGAATCTCAGCCTGCAGAATGCTGACTGTGTTTGCCGTAG
CTGTCTTGTGA
AA sequence
>Lus10027301 pacid=23145479 polypeptide=Lus10027301 locus=Lus10027301.g ID=Lus10027301.BGIv1.0 annot-version=v1.0
MYSVHWFCVRIDEATSEKKKKHALVYMDSRSFKISAVVSACWSHHWLEQCIVLLENGSLFLFDLESSFRRTLLKVSWDDDELLHKEDNCKWLGCEFSWHP
RTLIVARSDAAFLVDWRFDDIKVTCLAIREGTHDDSKLSPRQFPVISASYWHPVAYTFRLSDLRSKSRDDTTHEWDDKSGFGIVLGSFLNSEFSLFCYGR
PYKSVGSKDFSTRFMRGGSLRISACRMLTVFAVAVL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G18310 unknown protein Lus10027301
[exp]
0 1
AT3G47300 SELT SELT-like protein precursor (.... Lus10002479
[exp]
8.1 0.7541
AT5G27990 Pre-rRNA-processing protein TS... Lus10027901
[exp]
8.8 0.6738
AT1G09900 Pentatricopeptide repeat (PPR-... Lus10015109
[exp]
12.4 0.7135
AT5G41950 Tetratricopeptide repeat (TPR)... Lus10018184
[exp]
15.2 0.7381
AT1G10150 ATPP2-A10 Carbohydrate-binding protein (... Lus10012487
[exp]
17.3 0.7128
AT5G50990 Tetratricopeptide repeat (TPR)... Lus10032531
[exp]
18.0 0.6671
Lus10025143
[exp]
22.1 0.7048
AT3G12550 FDM3 factor of DNA methylation 3, X... Lus10000950
[exp]
23.2 0.6642
AT4G10925 Nuclear transport factor 2 (NT... Lus10023064
[exp]
25.5 0.6923
AT3G45210 Protein of unknown function, D... Lus10000724
[exp]
31.0 0.6857

Lus10027301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.