Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56960 1151 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 1134 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G07960 987 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G77740 725 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 713 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 583 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 545 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 537 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G26420 499 / 1e-166 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G01460 230 / 1e-67 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039011 [exp] 1534 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 1284 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 1283 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10002734 [exp] 924 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10008651 [exp] 922 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 833 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 825 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10018200 [exp] 727 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 726 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036800 [exp] 1189 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 998 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 978 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.005G172800 [exp] 738 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 731 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 624 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G121200 [exp] 542 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.019G015768 [exp] 488 / 9e-162 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 370 / 3e-116 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 348 / 1e-107 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10027306 pacid=23145377 polypeptide=Lus10027306 locus=Lus10027306.g ID=Lus10027306.BGIv1.0 annot-version=v1.0 ATGAGCAAAGAACAGAGTGGGGTGGCCAAGGCATGGGAAGCCACAATACGCAAAACCCAGGCGGCCAAGAAGCGGGCCAACAGCATCTTCGGCACCATCT CCTTAGCTCCCATGCCCGACGAGGACATCAATGGCGATGGCTCTATCGTCGAAGATGGCCCCACCGCATCAAACAATGGCGGGGCAGGGGAGGCAGGGTA CTACGCCGAGAAGGTGTTGCCGAACGGGGATTACTATACGGGGCAGTGGTACGACAATTTCCCCAACGGGAGGGGAAAGTATTTGTGGACGGACAGGTGC ATGTACGTCGGGGAATGGTACAAAGGGAAGACGATGGGACGTGGGAGGTTCAGTTGGCCGTCGGGGGCGACGTACGAAGGGGAGTTCAAGAGCGGATATA TGGACGGGACGGGGACTTATTCGGCGGCGAATGGGGATATATATCGTGGACAGTGGGTCATGAATCTTAAGCATGGTCATGGCATCAAGCAGTTCGCTAA CGGAGATTGGTACGACGGGGATTGGAGAAGAGGTCTACAAGAAGGGCAAGGCAAATACCAATGGAAAGCCACCAACAACCACTACGTCGGCGAATGGAAA AACGGCAGCATCTGCGGCAAAGGAACCTTCACGTGGGAGAACGGCAACCGTTACGACGGCCAGTGGGAAGACGGCGTCCCAAAGGGCAACGGCACGTTCA CGTGGCCCGACGGGAGCTTCTACGTCGGGAACTGGAGCAAAGACCCGACCGAACAGAACGGGAGCTACTACCCTTCCGCGCCGTCAGCCAGCCAGCTGGA GTGGGACCCGAAGGACGTGTACAACGTCCACCTGGTGGAATGCCCGATATGCCCCTGCGAGAAAGTTTCCATTTTGCCCTCGCAGAAGAAGCTGGCAATG TGGAACTCGTCCAAGAACAGCGAGAAGGCTCGCCGGCTCTCGGTCGACGGCAGGGTCAGCGTGGGGATTGAGAGAGGGTTTGAGAGGATGAACATGTGGG GCGACGTCAGCGAGGAGCAGGTTCCAGCCGGGAGGATGTCGTCGGCCGGAGATGGTTTTGTTGGAGGAGGAGGTGGTGGTGGTGGGAGGAGGGATATGGA GGCGGCGGAGGTTTTGGGTCTGGATGAAATGGAAGAGCAAATGATCAACTTTGCCGCCACTCTTAATAAAGGTTTGCCGATGAAGGTGCCCAAGGTTTCG AAACGGCAGGGTGACACTATTTGTAAAGGGCACAAGAACTATGACCTCATGCTTAATCTCCAACTTGGCATCAGACACTCAGTTGGAAGACCAGGACCAG TAGCATCACTTGATCTAAAGGCATCTGCATTTGACCCAAAGGAGAAAGTGTGGACAAGATTCCCACCAGAAGGAAGTAAACACACTCCTCCCCATTGTTC CACCGAGTTCAAGTGGAAAGACTACTGCCCTTTAGTTTTCAGGTCATTAAGGAAGTTATTTAAAGTTGATGCGGCCGATTACATGTTGTCTATATGTGGG AATGACGCGCTGCGCGAGCTCTCGTCTCCTGGCAAGAGCGGTAGCTTCTTTTATTTGACGAACGATGATCGTTACATGATCAAGACAATGAAGAAGGCAG AAGTCAAAGTGCTTATAAGGATGCTAGCTGCATACTATAATCATGTGAGAACATTTGAGAATACCTTAGTTATCAGATTCTATGGACTTCACTGCGTCAA ATTAACTGGACCTGCACAAAAGAAGGTAAGGTTCATAATAATGGGGAATCTGTTTGTTTCGGAGTATGCAATCCACAGACGGTTCGACCTCAAGGGATCA TCGCTGGGGCGGATCACGGAGAAACCAGAGTCCGAAATCAATGCCAACACCATTCTTAAAGACCTTGACCTGAATTTCATTTTCAAGTTGCAGAAAGCTT GGTTCCAAGAGTTCTGCAGGCAAGTAGATAGAGACTGCGAGTTTCTTGAACAAGAGAGGATTATGGACTACAGCCTTCTAGTTGGCCTTCATTTTCGAGA CATTTCGCCTATTCGAGAAATCATTCCTACTAAGGCTGAACCTCCTAAAGCTGATGTTGAAAGAGAAGAAGGTCCTCGACTTTCTAGAGCGGACATGGAT CAACTTCTACTAGATCCAACCAAATGGGCACGGATCAGACTAGGAATGAACATGCCAGCAAGAGTGGAAAGAACAATGAGAAAAAACGACTACGAGCTTC AGCTGGTAGGAGAGCCAACTGGGGAGTTCTACGATGTGATACTGACATTCGGTATCATCGACATACTTCAAGACTACGACATTAGCAAGAAGCTGGAACA TGCATATAAATCCATACAGTATGACCCTACTTCTATTTCAGCTGTTGATCCTAAGCAATACTCCAGGAGATTCAGAGACTTCATCTTCAGAATATTTTCT GAAGATTCCTAG
AA sequence Show only first row Show all	>Lus10027306 pacid=23145377 polypeptide=Lus10027306 locus=Lus10027306.g ID=Lus10027306.BGIv1.0 annot-version=v1.0 MSKEQSGVAKAWEATIRKTQAAKKRANSIFGTISLAPMPDEDINGDGSIVEDGPTASNNGGAGEAGYYAEKVLPNGDYYTGQWYDNFPNGRGKYLWTDRC MYVGEWYKGKTMGRGRFSWPSGATYEGEFKSGYMDGTGTYSAANGDIYRGQWVMNLKHGHGIKQFANGDWYDGDWRRGLQEGQGKYQWKATNNHYVGEWK NGSICGKGTFTWENGNRYDGQWEDGVPKGNGTFTWPDGSFYVGNWSKDPTEQNGSYYPSAPSASQLEWDPKDVYNVHLVECPICPCEKVSILPSQKKLAM WNSSKNSEKARRLSVDGRVSVGIERGFERMNMWGDVSEEQVPAGRMSSAGDGFVGGGGGGGGRRDMEAAEVLGLDEMEEQMINFAATLNKGLPMKVPKVS KRQGDTICKGHKNYDLMLNLQLGIRHSVGRPGPVASLDLKASAFDPKEKVWTRFPPEGSKHTPPHCSTEFKWKDYCPLVFRSLRKLFKVDAADYMLSICG NDALRELSSPGKSGSFFYLTNDDRYMIKTMKKAEVKVLIRMLAAYYNHVRTFENTLVIRFYGLHCVKLTGPAQKKVRFIIMGNLFVSEYAIHRRFDLKGS SLGRITEKPESEINANTILKDLDLNFIFKLQKAWFQEFCRQVDRDCEFLEQERIMDYSLLVGLHFRDISPIREIIPTKAEPPKADVEREEGPRLSRADMD QLLLDPTKWARIRLGMNMPARVERTMRKNDYELQLVGEPTGEFYDVILTFGIIDILQDYDISKKLEHAYKSIQYDPTSISAVDPKQYSRRFRDFIFRIFS EDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10027306 [exp]	0	1
AT2G17380		AP19	associated protein 19 (.1)		Lus10026316 [exp]	8.8	0.8992
AT3G57030			Calcium-dependent phosphotries...		Lus10009651 [exp]	9.6	0.8810
					Lus10015895 [exp]	11.2	0.9247
					Lus10027902 [exp]	17.0	0.9220
AT2G27250		AtCLV3, CLV3	CLAVATA3 (.1.2.3)		Lus10013340 [exp]	20.8	0.9201
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	25.0	0.9098
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10017474 [exp]	27.9	0.9098
					Lus10038707 [exp]	30.6	0.9098
AT5G64820			unknown protein		Lus10025572 [exp]	33.0	0.9098
AT2G23810		TET8	tetraspanin8 (.1)		Lus10027256 [exp]	35.3	0.9098

Compare expression of checked genes

Lus10027306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.