Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039012 [exp] 172 / 2e-53 AT3G57060 299 / 8e-92 binding (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027307 pacid=23145477 polypeptide=Lus10027307 locus=Lus10027307.g ID=Lus10027307.BGIv1.0 annot-version=v1.0 ATGGCTAATCAGATTGCCACTAACCTTGGCCTTTACTTGCTTACAGAGGATGATACAGCTGAGCCAGCCATGGATGATACAACTGGGTCAGCCGAGGATG CTATAGCTGAGCCAACCACGGATGATGCAACTGAGCCAGCTGTGGATGATGCAGCTGAGCCAGTTATGGATTATGAAGCTGAGCCAGCCATGGATGATAC TGTTGAGCCAGCCGTGGATGATACTTCTCCATCTGTGAATTGCCCATCAGATCTAAAATCCAACGCAACTGTTGAAGATTCAGGTCCTTCAAGTCAAGTG ACAGCAGTTGAGTCAGAACTTGATGGTGATGAAGTCCAATCTATAAAAAGTCCTCCTAAGTCTAGAAGGACGAGAAAGAGCAGCGTGAAAGATCAAGGAA CAATTCTCAATACATCCACGAGAAGATGTACAAGGTCACAACTAAGGAAAGTCTCTGATTCTGCATTAGAACATGAAATTGTCACATCTCGTGTCACTCC TTAA
AA sequence Show only first row Show all	>Lus10027307 pacid=23145477 polypeptide=Lus10027307 locus=Lus10027307.g ID=Lus10027307.BGIv1.0 annot-version=v1.0 MANQIATNLGLYLLTEDDTAEPAMDDTTGSAEDAIAEPTTDDATEPAVDDAAEPVMDYEAEPAMDDTVEPAVDDTSPSVNCPSDLKSNATVEDSGPSSQV TAVESELDGDEVQSIKSPPKSRRTRKSSVKDQGTILNTSTRRCTRSQLRKVSDSALEHEIVTSRVTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10027307 [exp]	0	1
AT3G57060			binding (.1.2)		Lus10039012 [exp]	1.0	0.9668
AT5G04320			Shugoshin C terminus (.1.2)		Lus10021420 [exp]	5.7	0.9484
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	6.8	0.9556
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10036080 [exp]	8.9	0.9345
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	10.8	0.9460
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10023105 [exp]	13.7	0.8471
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	14.8	0.9431
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	15.0	0.9266
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031823 [exp]	15.7	0.9075
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027933 [exp]	18.0	0.9313

Compare expression of checked genes

Lus10027307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.