Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17950 76 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006150 [exp] 198 / 7e-64 AT3G17950 132 / 1e-37 unknown protein Lus10023770 [exp] 40 / 0.0003 AT5G02440 97 / 2e-25 unknown protein Lus10016560 [exp] 40 / 0.0004 AT5G02440 66 / 2e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045700 [exp] 115 / 8e-33 AT3G17950 120 / 3e-34 unknown protein Potri.015G036900 [exp] 110 / 8e-31 AT3G17950 118 / 2e-33 unknown protein Potri.006G084400 [exp] 50 / 1e-07 AT5G02440 78 / 5e-18 unknown protein Potri.009G030100 [exp] 50 / 1e-07 AT5G02440 98 / 1e-25 unknown protein Potri.001G238900 [exp] 48 / 7e-07 AT5G02440 81 / 4e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027309 pacid=23145470 polypeptide=Lus10027309 locus=Lus10027309.g ID=Lus10027309.BGIv1.0 annot-version=v1.0 ATGGTTCCACTTCCGCCACCGTCTCCCACCAGCTCCTCCGTTTCCTCCTCCGATCTCGACACTGAGTCAACAGGCTCTTTCTTCCACGATCGGAGCACCA CATTAGGCACCCTAATGGGGGTTACATTTCCGGCGGCCCAATCTGCACCGGCGGCCATGGATCTCAGTTTCAACAACTCGAGAAAGCAGAGGAGGGTTAT GCGAATCAAGAAGAAATTCCACAAGGCGACGGCGGTGGCTGAGAGGCGGAGGAAGTGGTGGAGCCTCTGCAGCGACGCCGAGGCCAGGCCGGCTTCTCTG GGGGAGTTTCTCGAGGTGGAGAGGAGGTACGGCGACGCCGCCTTCTTCGACGGTGAAGATGCAGCTGCTGCGGCGGTGTGTGAAGGAGGAAACAGGGGAC GCCCGCTTTTCGCCGACGGACGGGTTCTGCCGCCGGGTGAAGTGGTCGTTGTTGGCGGTGGTTCCTCATCAGCTGTGGCGAGAGGAACTATGAGCAGATT TCCGGTTATGCTGACTGGGATCTGTAGTGGTGGTGTCGGATAA
AA sequence Show only first row Show all	>Lus10027309 pacid=23145470 polypeptide=Lus10027309 locus=Lus10027309.g ID=Lus10027309.BGIv1.0 annot-version=v1.0 MVPLPPPSPTSSSVSSSDLDTESTGSFFHDRSTTLGTLMGVTFPAAQSAPAAMDLSFNNSRKQRRVMRIKKKFHKATAVAERRRKWWSLCSDAEARPASL GEFLEVERRYGDAAFFDGEDAAAAAVCEGGNRGRPLFADGRVLPPGEVVVVGGGSSSAVARGTMSRFPVMLTGICSGGVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17950			unknown protein		Lus10027309 [exp]	0	1
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10029270 [exp]	3.5	0.7760
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10015154 [exp]	3.7	0.7951
AT5G44005			unknown protein		Lus10003610 [exp]	10.1	0.7574
AT5G44005			unknown protein		Lus10008220 [exp]	12.6	0.7497
AT3G15630			unknown protein		Lus10033048 [exp]	13.4	0.6830
AT1G30700			FAD-binding Berberine family p...		Lus10038439 [exp]	17.9	0.7336
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10027744 [exp]	33.5	0.7033
AT3G11590			unknown protein		Lus10021324 [exp]	35.2	0.7123
AT5G47740			Adenine nucleotide alpha hydro...		Lus10019487 [exp]	41.5	0.6736
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10008567 [exp]	42.6	0.7251

Compare expression of checked genes

Lus10027309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.