Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33350 616 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 371 / 5e-123 MEF21 mitochondrial editing factor 21 (.1) AT4G37380 341 / 4e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59200 335 / 8e-109 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 333 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 329 / 4e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 331 / 1e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 323 / 3e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 323 / 3e-103 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 318 / 2e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005987 [exp] 366 / 2e-121 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 347 / 5e-114 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10010385 [exp] 338 / 5e-109 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 340 / 7e-109 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027389 [exp] 333 / 1e-108 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 333 / 6e-108 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10024971 [exp] 335 / 7e-108 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039974 [exp] 320 / 5e-103 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10029344 [exp] 322 / 8e-103 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089400 [exp] 758 / 0 AT1G33350 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 379 / 9e-126 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.007G050200 [exp] 367 / 3e-120 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 356 / 2e-117 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 354 / 2e-116 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 354 / 3e-116 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.005G202600 [exp] 347 / 1e-113 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G141200 [exp] 337 / 6e-110 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 338 / 6e-109 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 332 / 7e-107 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10027311 pacid=23145532 polypeptide=Lus10027311 locus=Lus10027311.g ID=Lus10027311.BGIv1.0 annot-version=v1.0 ATGCAAAATCTGAACCAGCATGTATTAGCCACACTCTCCAGAAGCAATCACCTCAACCACCTCAAACAACTCCAATCCTTCCTCACCATTCTGGGCCATT CCCAGACCCAATTCTACGCTTTCAAGCTCGTCCGTTTCTGCGTCCTCAACCTCTCCGACCTCTCCTACGCCCGCTTCATCTTCAACCGCCTATGGTCTCC CAACATCTACCTCTACACCGCCATGGTCACGGCCTACGCCTCCGTCTCCGACCACCGCTCGTCCTTCTCCCTCTTCCGCGACATGGTCCGCCGCCAGCTC CCACCCAAGCCCAACCAGTTCATCTTCCCTCACGTCTTGAAATCGTGCGAGACTACGAGTGTAGTTCATCCGCATATTGAGAAATCGGGGTTCGGGAACT ATCCGGTTGTTCAGACGGCGCTTGTGGATTCGTACTCGAGGTCGTCCGGTTCGGATATGAGGATTGCACGCAAGATGTTCGACGAAATAGCTGAGAAGAA TGTTGTTTCCTGGACTGCTATGATTTCGGGGTTGGTCAGGGCTGGGGAAATGGAAGATGCGTTCTCACTGTTTGATAAAATGCCAGAGAGAGATGTTCCT TCGTGGAACGCTGTGATCGCCGGTTGCACGCAGAACGGGATGTTTCCGGAGGCGATTTCGCTTTTCCGAAGGATGATTCATTGCCTCATGAGGCCGAATC AAGTCACTGTTGTGTGTGCATTGTCTGCTTGTGGACATACCGGGATGCTCCAGCCTGGTAAGTCCATTCATGGCTTTGTCTACAGGCAAGGATTCGATTC CGATTCTTTCGCTGTGAATGCCCTCATTGATATGTACGGAAAATGCGGGAGTTTGGAACAAGCGAGGAAGGTGTTCGATTTGACACCGAAGAGAAGCTTA TCGGCGTGGAACTCGATGATCAATTCGTTCGCCCTCCACGGGCAGAGCGAGGGAGCTATCTGTATGTTCGAACAAATGTTGCAGTATAGAGAATTCGTAA CGCCAGATGAAGTGACATTCGTCGGTCTGTTGAATGCTTGTACTCACGGAGGGTTGATCGAAAAGTGCCGATTCTATTTCGCGATGATGACCGAAGAGTA CATGCTTGAGCCACAGATCGAACACTACGGATGTTTGATCGACATTCTCGGCCGGGGTGGAAAGCTGGAAGAGGCGATGGATGTTGTAAGGGGGATGAAG ATGGAGCCTGATGAAGTTGTGTGGGGGTCTTTGCTTAACGGATGCAGAGTGTACGGCCATACTGATTTGGCCGAGTTTGCGATTACAAAGTTGATGGAGA TCGATCCAAGGAATGGGAGCTATGGCGTGATGTTGGCGAATCTGTATGGGGAGTTGGGGAGGTGGGACGATGCTCGTAAAGTGAGGAGGATGTTGAAGCA GAGTAATACGTATAAGACGCCAGGTTGCAGTTGGATTGAGGTTGATAGTGAGATTTGTCAGTTTCACTCGCTGGATAAAACGCACGTTAGAACAGAGGAG ATATATAATGCACTGGAGAGTCTGCTTTTGTTGTACCAAATGGAGTTGCTGGACTGGAGGCTGGAGTTGGAATCTTGA
AA sequence Show only first row Show all	>Lus10027311 pacid=23145532 polypeptide=Lus10027311 locus=Lus10027311.g ID=Lus10027311.BGIv1.0 annot-version=v1.0 MQNLNQHVLATLSRSNHLNHLKQLQSFLTILGHSQTQFYAFKLVRFCVLNLSDLSYARFIFNRLWSPNIYLYTAMVTAYASVSDHRSSFSLFRDMVRRQL PPKPNQFIFPHVLKSCETTSVVHPHIEKSGFGNYPVVQTALVDSYSRSSGSDMRIARKMFDEIAEKNVVSWTAMISGLVRAGEMEDAFSLFDKMPERDVP SWNAVIAGCTQNGMFPEAISLFRRMIHCLMRPNQVTVVCALSACGHTGMLQPGKSIHGFVYRQGFDSDSFAVNALIDMYGKCGSLEQARKVFDLTPKRSL SAWNSMINSFALHGQSEGAICMFEQMLQYREFVTPDEVTFVGLLNACTHGGLIEKCRFYFAMMTEEYMLEPQIEHYGCLIDILGRGGKLEEAMDVVRGMK MEPDEVVWGSLLNGCRVYGHTDLAEFAITKLMEIDPRNGSYGVMLANLYGELGRWDDARKVRRMLKQSNTYKTPGCSWIEVDSEICQFHSLDKTHVRTEE IYNALESLLLLYQMELLDWRLELES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33350			Pentatricopeptide repeat (PPR)...		Lus10027311 [exp]	0	1
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10028964 [exp]	8.9	0.8417
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	9.7	0.8474
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	14.7	0.8502
AT3G04310			unknown protein		Lus10004401 [exp]	50.2	0.8144
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	52.5	0.8041
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031430 [exp]	57.2	0.7998
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10043165 [exp]	58.3	0.7766
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	64.1	0.8130
AT2G03430			Ankyrin repeat family protein ...		Lus10037116 [exp]	68.6	0.8129
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10009183 [exp]	70.6	0.7786

Compare expression of checked genes

Lus10027311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.